PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020725m
Common NameCICLE_v10020725mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 367aa    MW: 40390.1 Da    PI: 9.0867
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020725mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.3e-39101160261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s
  Ciclev10020725m 101 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 160
                      6899******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-27100159IPR003851Zinc finger, Dof-type
PfamPF027013.2E-33103159IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.199105159IPR003851Zinc finger, Dof-type
PROSITE patternPS013610107143IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYVYLYRSLL NKKPRKVRAE LIISCCRQNS KEVNSLFLSL SEVITCFSSI NFCSSQFMDA  60
AKWPQNFPEV GGVKAMEEVV SNTCNSSSSS RPPMLERKAR PQEQLNCPRC NSTNTKFCYY  120
NNYSLTQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS ISSSAAAASS SNNNNNNNNN  180
YNKLIIPDLN PPSLSHFSSH ENPKILKGGQ DLNLGFQVMH NNANDMSQYA DHPAVASKAE  240
TNTTSNDNIN NNMSPVSALD LLRTGIASRA GLDHFIPTPM PDSNTLFSSG FPLQDIKPAA  300
TLSFSIDQAN RFGIQDNIGN GSRLFFPFGE LKQLSSASTT EVDHHSNKGT STSTGYWNGM  360
FGGGSW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491311.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024043623.10.0dof zinc finger protein DOF2.5 isoform X1
TrEMBLV4U1W40.0V4U1W4_9ROSI; Uncharacterized protein
STRINGXP_006444805.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-70Dof family protein