PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020718m
Common NameCICLE_v10020718mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 368aa    MW: 41713.1 Da    PI: 4.6483
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020718mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35481392102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++e++sws+ g sfvv+d++ f++++Lp++Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+
  Ciclev10020718m  48 FLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDR---------WEFSNEGFLRGERHLLK 132
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  Ciclev10020718m 133 NIKRRKA 139
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-3544137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-3944137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-6044137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-3248137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNPYYMIKEE QPGGIPSESG ADEAAVMTMM MAAPQPMEGL HDTGPPPFLT KTYEMVDDPN  60
TNEVVSWSRG GVSFVVWDPH AFSTSLLPRH FKHSNFSSFV RQLNTYGFRK IDPDRWEFSN  120
EGFLRGERHL LKNIKRRKAP SQPLPPPQAL GPCVELGRFG LDGEFERLIR DKQFLMMELV  180
KLRQQQQNTR AYLQAMELRL EGTEKKQQQM MSFLARAMQN PAFLQQLVQQ KEKRKELEEA  240
MTKKRRRPID QGPIGAGVAG SSDFGEGMSS VKAEPLEYGD YGFEMSELEA LALEMQGYGR  300
TRSEQEGPQE LEPPESGARE LDEGFWEELL NERFEGELDM PGSEVGDDED VTVLIDRFGY  360
LGSSPKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-244613727129Heat shock factor protein 1
5d5v_B5e-244613727129Heat shock factor protein 1
5d5v_D5e-244613727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKNIKRR
2232246KRKELEEAMTKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.80930.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479647.10.0heat stress transcription factor A-7a
RefseqXP_006479648.10.0heat stress transcription factor A-7a
RefseqXP_024044201.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-129HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067FZJ30.0A0A067FZJ3_CITSI; Uncharacterized protein
TrEMBLV4TA970.0V4TA97_9ROSI; Uncharacterized protein
STRINGXP_006479647.10.0(Citrus sinensis)
STRINGXP_006443978.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B