PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020688m
Common NameCICLE_v10020688mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 371aa    MW: 42413.4 Da    PI: 9.2166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020688mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-06129152123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg++F +++ L++H +  H
  Ciclev10020688m 129 YVCGVCGRRFYSNEKLVNHFKQiH 152
                      9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.3E-950128IPR029060PIN domain-like
SuperFamilySSF576674.55E-5126155No hitNo description
Gene3DG3DSA:3.30.160.608.1E-5129155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.007129152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.154129157IPR007087Zinc finger, C2H2
PROSITE patternPS000280131152IPR007087Zinc finger, C2H2
CDDcd061673.84E-16146288No hitNo description
PfamPF019365.2E-9201281IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10108.3E-9214281IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MFQKFLNLCD RTKFTRLETQ NPFVSLYRRF HLEPNSQNPA STLEPKTVQN NVGVFWDLDN  60
KPPNSVPPFE AAIKLKKSIS SLGVVKYMVA YANSHAFSYV PQVVREQREE RKLFNQLENR  120
GVIKPAEPYV CGVCGRRFYS NEKLVNHFKQ IHEREQKKRL NQIESARGKR RVHLVGKYSM  180
KMEKYKRAAR AILTPKIGYG LADELKRAGF WVRTVSDKPQ AADVALRNHM VDMMDKRHVE  240
CLVIVSDDSD FVDVLQEAKY RCLKTVVVGD VNDGALKRIA DASFSWRDIL MGKAKKEAVS  300
VVGKWKDRDI LKRLEWTYSP EVEKKAHDWA DGNEDADIDD ATGANNADCI PKEDNGAWWE  360
LESSDAEAIS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440402.10.0uncharacterized protein LOC18046927
TrEMBLV4TJU60.0V4TJU6_9ROSI; Uncharacterized protein
STRINGXP_006440402.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-144C2H2 family protein