PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020681m
Common NameCICLE_v10020681mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 372aa    MW: 39283.1 Da    PI: 8.3045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020681mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.5e-11305350655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Ciclev10020681m 305 SIAERERRTRISRKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 350
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.846299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-14302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.63E-11303354No hitNo description
Gene3DG3DSA:4.10.280.105.3E-13304361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MYHHPSSSSS SQQNPMGPTT AAGVGGSGGL TRYVSAPGSL LRTAVDSIIG SSSSSPSPSQ  60
PSIVSSSHSH QHHHYFAGGS TTTAGGDSSP VSSFTTTEST CKVNSSNAPG NNTKSGLQRS  120
YGLNDIPQTH AASSSSSLLR QRSSPAGFLS HFASENVGFS VTRETGNYNS QGRSSGGLGV  180
SRLKSQLSFT GQDSLSQISE ESENGIDGVS SGSGRQNATH SYSTASFGMD SWENGTSIVF  240
SAPPSKRTKT LDGDIFNCLN ALDSQFTMPQ TSLEMATVDN LLNIPEDSVP CKIRAKRGCA  300
THPRSIAERE RRTRISRKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ NQVENLHKDL  360
EHCTCGCKPT S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.69840.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443135.10.0transcription factor bHLH128 isoform X1
RefseqXP_006478879.10.0transcription factor bHLH128 isoform X1
SwissprotQ8H1023e-98BH128_ARATH; Transcription factor bHLH128
TrEMBLV4TXC50.0V4TXC5_9ROSI; Uncharacterized protein
STRINGXP_006478879.10.0(Citrus sinensis)
STRINGXP_006443135.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]