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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020655m | ||||||||
Common Name | CICLE_v10020532mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SBP | ||||||||
Protein Properties | Length: 375aa MW: 41563.1 Da PI: 6.9748 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.2 | 3.1e-40 | 151 | 228 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCevhskap+v v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Ciclev10020655m 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 228 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-33 | 146 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.248 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-38 | 150 | 231 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-31 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEIGGNIFIR EDTGNSNNNN SNNLAWENMW ALNNHSRFDL GNSSSLYATA EITSTTHTSE 60 GNAAHALMFP HGQSLYAGDG SNLHPDPHLM CLKLGKRHYF EDATATSIGD RGFSMVKKGK 120 PYYTFASAGG GGVGPSSSSP VLVTSTATVP RCQVEGCHVP LINAKDYHRR HKVCEVHSKA 180 PKVKVLGLEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSHES LSRNSSQGRA 240 LSLLSSKAES WVSSSDLSSR CSAALRELIA ENRAAIVARH LILDSRDWHL HLANDGETQM 300 VCSTSMTSSH QYQMLTEQHN WGRYQQTNTH VTLDLMQAPT EDLGFLSVRG ETKDEEEEEE 360 CSEIWSSLEG DHLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 152 | 225 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.4726 | 0.0 | fruit |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015388930.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X2 | ||||
TrEMBL | V4U8Q7 | 0.0 | V4U8Q7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464841.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006445345.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 7e-36 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020655m |
Entrez Gene | 18046573 |