PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10020575m

Common Name

CICLE_v10020575mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 385aa MW: 43282.7 Da PI: 6.8757

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10020575m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.8	6.9e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA ELS+LCd+++ +++fs+tg+ Ciclev10020575m 9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.833	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ 60 RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ 120 VRILQAQLTE VHQRLRQKHL PCECANQGAD EGFKRSYRAC YWSNPGNIES IEHLRQMENS 180 LRESINQICL HKENFGKQQL MSLEFAGQSG MHLPLMMNGM QENQSLSWLP NNDNQHMLVP 240 NDPSFLPQRD MGCSEDAHIS SYSGFLGAGK EIEVGNSGQA ENMEHGGGNL NELSNSACIS 300 LQLGEQYSYP PYSSLNLPSD DKKLKPDAEM NLQGNPAVFQ VNSNFELSGP MYGNGHHDWV 360 SASGPCGIAM FDENSYHQQT NRLS*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ  60
RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ  120
VRILQAQLTE VHQRLRQKHL PCECANQGAD EGFKRSYRAC YWSNPGNIES IEHLRQMENS  180
LRESINQICL HKENFGKQQL MSLEFAGQSG MHLPLMMNGM QENQSLSWLP NNDNQHMLVP  240
NDPSFLPQRD MGCSEDAHIS SYSGFLGAGK EIEVGNSGQA ENMEHGGGNL NELSNSACIS  300
LQLGEQYSYP PYSSLNLPSD DKKLKPDAEM NLQGNPAVFQ VNSNFELSGP MYGNGHHDWV  360
SASGPCGIAM FDENSYHQQT NRLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	5e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024954645.1	0.0	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-107	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	V4VM26	0.0	V4VM26_9ROSI; Uncharacterized protein
STRING	XP_006440614.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-103	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Ciclev10020575m
Entrez Gene	18048439

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]