PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020549m
Common NameCICLE_v10020549mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 388aa    MW: 43123.9 Da    PI: 6.8874
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020549mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.66.8e-55181511129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee++++yL++kv ++++++  +i evd++k+ePwdLp+k+k +eke yfF++rd+ky+tg r+nrat++gyWkatgkdke+++
  Ciclev10020549m  18 LPPGFRFHPTDEEIITHYLTEKVMNTSFSA-CAIGEVDLNKSEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYK 110
                      79*************************999.67***************99999****************************************9 PP

              NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                             +g lvg+kktLvfykgrapkgekt+Wvmheyrle
  Ciclev10020549m 111 GnkggvgGGGLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 151
                      76666665666****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-637176IPR003441NAC domain
PROSITE profilePS5100559.17118175IPR003441NAC domain
PfamPF023653.4E-2919150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEAVVDQHN HRQGVIDLPP GFRFHPTDEE IITHYLTEKV MNTSFSACAI GEVDLNKSEP  60
WDLPSKAKMG EKEFYFFCQR DRKYPTGMRT NRATEAGYWK ATGKDKEIYK GNKGGVGGGG  120
LVGMKKTLVF YKGRAPKGEK TNWVMHEYRL EGKFSYYNLP KAAKDEWVVC RVFHKNIGGG  180
IKKIPIPGLP MNSSFGDDFF ANYASLPPLM DPPGSSSFGN GDHQNEFKPM NTASTSSRSY  240
NIPADNQNFL QPHQIPIQNQ IFSYHQNNNN PNPGYLHQGT IRSSTGAISS LMGAGFEGNG  300
DGQAILRALA STSHHHQQHN LESSSQCKVE QFSSNQSMIS RSQDTGLSTD MNTTTEISSV  360
VSKQDNKSYD QDLDATSIAE LDSFWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511617615166NO APICAL MERISTEM PROTEIN
1ut4_B4e-511617615166NO APICAL MERISTEM PROTEIN
1ut7_A4e-511617615166NO APICAL MERISTEM PROTEIN
1ut7_B4e-511617615166NO APICAL MERISTEM PROTEIN
3swm_A5e-511617618169NAC domain-containing protein 19
3swm_B5e-511617618169NAC domain-containing protein 19
3swm_C5e-511617618169NAC domain-containing protein 19
3swm_D5e-511617618169NAC domain-containing protein 19
3swp_A5e-511617618169NAC domain-containing protein 19
3swp_B5e-511617618169NAC domain-containing protein 19
3swp_C5e-511617618169NAC domain-containing protein 19
3swp_D5e-511617618169NAC domain-containing protein 19
4dul_A4e-511617615166NAC domain-containing protein 19
4dul_B4e-511617615166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051532e-47KR605153.1 Manihot esculenta NAC transcription factors 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443353.10.0NAC domain-containing protein 87
RefseqXP_006479052.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-110NAC87_ARATH; NAC domain-containing protein 87
TrEMBLV4T8H10.0V4T8H1_9ROSI; Uncharacterized protein
STRINGXP_006479052.10.0(Citrus sinensis)
STRINGXP_006443353.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-104Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]