PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 399aa MW: 44604.9 Da PI: 7.9502

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10020480m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.7	1.3e-54	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kkv + +++ ++i +vd++k ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat sgyWkatgkdke+++ Ciclev10020480m 16 LPPGFRFHPTDEELITHYLYKKVLDVCFSC-RAIGDVDLNKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYR 108 79*************************9.89***********888999************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkgek++Wvmheyrl Ciclev10020480m 109 -GKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRL 141 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-60	13	151	IPR003441	NAC domain
PROSITE profile	PS51005	55.552	16	199	IPR003441	NAC domain
Pfam	PF02365	6.5E-29	17	141	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-60	187	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MENVSGVGKE DDQMDLPPGF RFHPTDEELI THYLYKKVLD VCFSCRAIGD VDLNKNEPWE 60 LPWKAKMGEK EWYFFCMRDR KYPTGLRTNR ATVSGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGE KSSWVMHEYR LDGKFSVHSL PKTAKVCAFS AVFSPVFFPL FLSTLFLLTL 180 FLCFLVMQNE WVLCRVFQKG SGGKKTHISG LAGLGSFGNE LGPPGLPPLM DSSPDNGSKT 240 IKSVADSAYV SCFSNSIDLQ RNQKTTTTIE NFFNNPPPIS VSSNCPDVFP RIPLSSNSFY 300 SPLSVPVPSH AQFPGSVFMQ DHSILRALIE NQGSNMSQSF KTEREMISVS QDTGLTADMN 360 PEISSVVSNL EMVKRPFNDH DAPSTSAGPV DFDCFWNY*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MENVSGVGKE DDQMDLPPGF RFHPTDEELI THYLYKKVLD VCFSCRAIGD VDLNKNEPWE  60
LPWKAKMGEK EWYFFCMRDR KYPTGLRTNR ATVSGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGE KSSWVMHEYR LDGKFSVHSL PKTAKVCAFS AVFSPVFFPL FLSTLFLLTL  180
FLCFLVMQNE WVLCRVFQKG SGGKKTHISG LAGLGSFGNE LGPPGLPPLM DSSPDNGSKT  240
IKSVADSAYV SCFSNSIDLQ RNQKTTTTIE NFFNNPPPIS VSSNCPDVFP RIPLSSNSFY  300
SPLSVPVPSH AQFPGSVFMQ DHSILRALIE NQGSNMSQSF KTEREMISVS QDTGLTADMN  360
PEISSVVSNL EMVKRPFNDH DAPSTSAGPV DFDCFWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	13	141	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	13	141	14	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-48	13	141	17	145	NAC domain-containing protein 19
3swm_B	2e-48	13	141	17	145	NAC domain-containing protein 19
3swm_C	2e-48	13	141	17	145	NAC domain-containing protein 19
3swm_D	2e-48	13	141	17	145	NAC domain-containing protein 19
3swp_A	2e-48	13	141	17	145	NAC domain-containing protein 19
3swp_B	2e-48	13	141	17	145	NAC domain-containing protein 19
3swp_C	2e-48	13	141	17	145	NAC domain-containing protein 19
3swp_D	2e-48	13	141	17	145	NAC domain-containing protein 19
4dul_A	2e-48	13	141	14	142	NAC domain-containing protein 19
4dul_B	2e-48	13	141	14	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440624.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-146	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	V4TQ85	0.0	V4TQ85_9ROSI; Uncharacterized protein
STRING	XP_006440625.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-144	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Ciclev10020480m
Entrez Gene	18048445

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]