PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020323m
Common NameCICLE_v10020323mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 420aa    MW: 46276.9 Da    PI: 8.6646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020323mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15242288455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+L+
  Ciclev10020323m 242 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLK 288
                      5*************************9.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.73E-17234292No hitNo description
Gene3DG3DSA:4.10.280.101.8E-18235307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18235307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.669238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13242287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-17244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSQCIVPNWN LRHQQRQEQV EAEEEADIST DVNHNNNPSS SHFFPMSSNY EVAADLTWGN  60
GQLSMHGLGG IIPTTPTKPT WGRSNDTLES IVHQAAITCH NNNNNKEITL QLHGQNSPAA  120
NRSSMVSSSG TKCSESPGQV PVMPGPLKKR TRADSDQCGR NFSSMQEGRG DRSACASASA  180
TCFRENDTTM MTWASYESLK SLKTKTTDED SASHGRSENQ DEDHETKTGR SHSSKRRRTA  240
AVHNQSERRR RDRINQKMKA LQKLVPNASK TDKASMLDEV IDYLKQLKAQ VQMMNNVRNN  300
MPQMNMMMPL GMQQQLQMSL LARMGMGVGL GTGMGMLDMN TMAAAAATAR TAPQSLPPPI  360
YSPAASVTLP DPYYAFLAQS MNVELYNKMA ALFRQQVKQN TIQQAACSPS MQSNHMQGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235250RRRTAAVHNQSERRRR
2246251ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440685.10.0transcription factor PIF7
TrEMBLV4TQD50.0V4TQD5_9ROSI; Uncharacterized protein
STRINGXP_006440685.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-39bHLH family protein