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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020263m | ||||||||
Common Name | CICLE_v10020263mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 427aa MW: 46471.4 Da PI: 6.4603 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.5e-10 | 229 | 287 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ Ciclev10020263m 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 287 9*********************************************9998888777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.8E-16 | 225 | 289 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.932 | 227 | 290 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-11 | 229 | 280 | No hit | No description |
Pfam | PF00170 | 9.8E-9 | 229 | 283 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.3E-10 | 229 | 283 | No hit | No description |
CDD | cd14703 | 1.84E-25 | 230 | 279 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDKDKSLSHG GIPPPSGRYS SFSPPGNNNF NVKPELPSSS SFPPLAPGGS SSDGSHFGHQ 60 SDSNRFSHDL SRMHDNPPKN VGHRRAHSEI LTLPDDISFD SDLGVVGGAD GPSLSDETEE 120 DLLSMYLDMD KFNASTATSG FQVGEPSAAA APAPTSAVAA GSGISSVENV GVGSTERPRI 180 RHQHSQSMDG STSIKPEMLM SASDEAPSAD SKKAMSAAKL AELALIDPKR AKRIWANRQS 240 AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLTAENSEL KLRLQTMEQQ 300 VHLQDALNDA LKEEIQHLKV LTGQAMPNGG PMMNYPSFGA GQQFYPNNQA MHTLLTAQQF 360 QQLQIHSQKQ QQQFQQHQLH QMQQQQLQQQ QQEQQQQTGE IKMRGSVPSP NQKENASDVN 420 PSTSKD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.4489 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00126 | DAP | Transfer from AT1G06070 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442989.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_006478733.1 | 0.0 | probable transcription factor PosF21 | ||||
Swissprot | Q04088 | 1e-159 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | V4VSX8 | 0.0 | V4VSX8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478733.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006442989.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2445 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 1e-138 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020263m |
Entrez Gene | 18045847 |
Publications ? help Back to Top | |||
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