PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020248m
Common NameCICLE_v10020248mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 430aa    MW: 46901.6 Da    PI: 9.7989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020248mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.35.7e-18124173255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Ciclev10020248m 124 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 173
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-23119194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-19120187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-15124177No hitNo description
PfamPF000102.2E-15124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MHAVDVAKSA LGPKLQALLE YGLLVLQNIE ATVNVGQWVS QSSSTNNSHR NSFSSLSCSQ  60
PLGMKSQSFM EMIKSAKGST HDDDLDDADE FILKRENSTT TNHKGDLRVK VEGKSNDQKP  120
NTPRSKHSAT EQRRRSKIND RFQMLRELIP HSDQKRDKAS FLLEVIEYIQ FLQEKVHKYE  180
GPFVGWKPER AKLAPWKNNH KHAESYVDQS QGINNGSATA LVFAAKFNEK NVSISPAIPG  240
SGQKPVESDM TSASTFKTMD PQPGITNKAM PFPMSLQPNC YKPVRNGGAA ASLRPRLASD  300
AENTTSQPQT LECHTRSCTG DMPISNNKKL KEQELPVEGG RINISNAYSQ GLLKTLTQAL  360
QSSGVDLSQA SVSVQIDLGK RAAQAPITLA SNLKGNEVPA SNQGTTGSRD RNGGEGSNQA  420
LKKQKIDKC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043894.10.0LOW QUALITY PROTEIN: transcription factor BIM1
TrEMBLV4TKY30.0V4TKY3_9ROSI; Uncharacterized protein
STRINGXP_006440827.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.32e-79bHLH family protein