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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020190m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 439aa MW: 47322.6 Da PI: 6.521 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.3 | 9.1e-15 | 222 | 277 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr+rr+ +NRe+ArrsR+RK+a + eLe+ + +L ae ++L k l ++++++ Ciclev10020190m 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277 68******************************************999888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.4E-16 | 220 | 284 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.4E-11 | 220 | 274 | No hit | No description |
PROSITE profile | PS50217 | 10.909 | 222 | 277 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-11 | 223 | 276 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.33E-10 | 224 | 273 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 227 | 242 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 2.3E-28 | 291 | 410 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MNSVFSADDF SDSFLSSPSP PPASFHALPM NRSQSEWELE KFLQEVTVSP RAISSSSASD 60 NSVPAVIGPS VMSKSRAYEI GDDDVVEIKK SHRDQSLDPP VIPSSTAPVD SDQYRAYLKT 120 KLDLACAAVA LRTAPVKPED KSSLIENQTQ AAKPSELGSQ AMATGTHPKA DFRPLGSADL 180 PAVQARPAAQ VRQSTSGSSR EDSDDDELEG DTETIEGLDS VDDKRARRML SNRESARRSR 240 RRKQAHLNEL ETQAGQLRAE HSSLLKGLTD VNQKYDESAV NNRILKADIE TLRAKVKMAE 300 ETVKRVTGLN PLLLARSDVP GVGMPLVNVP LDASRNATHP MQPNPNQFFH QAIPSISTPT 360 PNHQSLDSSF PSNIQLPTVG NPQSDRGGKN MTETSPLQHA VGLEHVPQGV GHRVSPPGAV 420 PGWDTGLPHA GSKNNKQR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 243 | RRSRRRKQ |
2 | 238 | 243 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.5090 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443938.2 | 0.0 | light-inducible protein CPRF2 isoform X2 | ||||
Refseq | XP_006479610.1 | 0.0 | light-inducible protein CPRF2 isoform X2 | ||||
TrEMBL | A0A067FZC3 | 0.0 | A0A067FZC3_CITSI; Uncharacterized protein | ||||
STRING | XP_006479609.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 2e-52 | basic leucine zipper 25 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020190m |