PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10020133m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 449aa MW: 48330.7 Da PI: 6.4568 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.3 | 9.5e-15 | 232 | 287 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr+rr+ +NRe+ArrsR+RK+a + eLe+ + +L ae ++L k l ++++++ Ciclev10020133m 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 68******************************************999888888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-11 | 230 | 284 | No hit | No description |
SMART | SM00338 | 3.4E-16 | 230 | 294 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.909 | 232 | 287 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-11 | 233 | 286 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.41E-10 | 234 | 283 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 237 | 252 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 2.4E-28 | 301 | 420 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 449 aa Download sequence Send to blast |
MNSVFSADDF SDSFLSSPSP PPASFHALPM NRSQSEWELE KFLQEVTVSP RAISSSSASD 60 NSVPAVIGPS VMSKSRAYEI GDDDVVEIKK SHRDQSLDPP VIPSSTAPVD SDQYRAYLKT 120 KLDLACAAVA LRTAPVKPED KSSLIENQTQ AAKPSELGSQ AMATVNVSTA HDALGTHPKA 180 DFRPLGSADL PAVQARPAAQ VRQSTSGSSR EDSDDDELEG DTETIEGLDS VDDKRARRML 240 SNRESARRSR RRKQAHLNEL ETQAGQLRAE HSSLLKGLTD VNQKYDESAV NNRILKADIE 300 TLRAKVKMAE ETVKRVTGLN PLLLARSDVP GVGMPLVNVP LDASRNATHP MQPNPNQFFH 360 QAIPSISTPT PNHQSLDSSF PSNIQLPTVG NPQSDRGGKN MTETSPLQHA VGLEHVPQGV 420 GHRVSPPGAV PGWDTGLPHA GSKNNKQR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 246 | 253 | RRSRRRKQ |
2 | 248 | 253 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ccl.5090 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443936.2 | 0.0 | light-inducible protein CPRF2 isoform X1 | ||||
Refseq | XP_006479609.1 | 0.0 | light-inducible protein CPRF2 isoform X1 | ||||
TrEMBL | A0A067FQX7 | 0.0 | A0A067FQX7_CITSI; Uncharacterized protein | ||||
STRING | XP_006479609.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02640.2 | 1e-44 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10020133m |