PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019845m
Common NameCICLE_v10019845mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 497aa    MW: 54469.7 Da    PI: 7.6666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019845mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.12.5e-1715109190
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka..eekewyfFskrdkkyatgk...rknratksgyWk 84 
                      lppGfrF Ptdeel+ +yL++k+++++l + e i+++++yk++PwdLpk     +  +  +++ w  + +r k y+++      +ra  s +W 
  Ciclev10019845m  15 LPPGFRFYPTDEELLGFYLRRKIQQRPLAI-EPIEQIGMYKYDPWDLPKcdqslT--GsvGHSTWETYNSRPKLYSRKYgvlGGHRA--SRRWW 103
                      79**************************99.89***************6455442..134777998899988888865422222333..33577 PP

              NAM  85 atgkdk 90 
                      a gk+ 
  Ciclev10019845m 104 AAGKTA 109
                      777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-171192IPR003441NAC domain
PROSITE profilePS5100518.46215182IPR003441NAC domain
PfamPF023651.8E-71659IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDERNENDKL DEIMLPPGFR FYPTDEELLG FYLRRKIQQR PLAIEPIEQI GMYKYDPWDL  60
PKCDQSLTGS VGHSTWETYN SRPKLYSRKY GVLGGHRASR RWWAAGKTAD TALFYNEAAY  120
ADAVRRKRNQ PICGESLPDF PSTALHGFRS WQFERSLQNG GKAGNQVQNG TEELANCKLR  180
SSDGGSSLKL ADAVGKKLKP IYGGSHPKCQ SMRPYYDGEA AFRSWHLGES SQNHSGTGKV  240
SICKKKFLDG ESSQQLQLPI VILKAEGPVN VSKQGKTICG GSHLDEFVCV SNYDEATAFR  300
SQQLDGESSQ EHTIIQVDHD SASSIGLAST PLNENASSSD SNHQSLRASA SPSEDRDVES  360
RVALSQAQSM REESPFDFDK LNKIILLLST EECLALLAIL FSGSSSLSTN ARILMRGAGI  420
SCAVGFYSSL GSSILKHIGK SEPAAPFLTA LGGVAAACGF TFLSCLFLPQ KLMLIFAGVI  480
CIMNIFILPF LFIKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-12186181Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478815.10.0uncharacterized protein LOC102607452 isoform X1
RefseqXP_006478816.10.0uncharacterized protein LOC102607452 isoform X1
RefseqXP_006478817.10.0uncharacterized protein LOC102607452 isoform X1
TrEMBLV4TWS50.0V4TWS5_9ROSI; Uncharacterized protein
STRINGXP_006478815.10.0(Citrus sinensis)
STRINGXP_006442920.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.13e-21NAC family protein