PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019820m
Common NameCICLE_v10019820mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 502aa    MW: 54412.9 Da    PI: 8.2997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019820mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.7e-31273331259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Ciclev10019820m 273 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 331
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-33257333IPR003657WRKY domain
SuperFamilySSF1182901.02E-27265333IPR003657WRKY domain
PROSITE profilePS5081129.918267333IPR003657WRKY domain
SMARTSM007741.2E-36272332IPR003657WRKY domain
PfamPF031061.6E-26274331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEKQQQRREL ALLHSGDFLR RNSDHRMMEN SINRDKPPIQ EMDFFSSNNN QLHDQERKIE  60
SSTLVLDSGV NIGLNLHTSC SGISRTANDD KSHTELSELK GELQRLHEEN RKLRNMLDQT  120
TKSYNDLQSQ LLLAMQKLAH GSPQGQVNLK AGAFNGMPSP LMLAQQFMDP RPSAALNVNE  180
PSVSDDKTRE LSASPANTAE VISKELDHPL TKNNIPGKQV SNSEDGAETS QSWGSPKSPK  240
LDHQPKNDEQ VSEVPFRKAR VSVRARSEAP LISDGCQWRK YGQKMAKGNP CPRAYYRCTM  300
AVGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAATAMA NTTSAAAAML LSGSSTSKDG  360
LTSSGFFHSV PFASTMATLS ASAPFPTITL DLTQSPNPMQ FLRGPSSSST FPLPLHGYPQ  420
LLRYGPAAGM PNNMQLGQRH ASMVETVTAA ITSDPNFTAA LAAAISTIIG SNNGNNGNNG  480
TSGMQPGSPQ LPQSCTTFST N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22259335176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444621.10.0probable WRKY transcription factor 47 isoform X1
SwissprotQ9ZSI71e-111WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A2H5NXV60.0A0A2H5NXV6_CITUN; Uncharacterized protein
TrEMBLV4U6R20.0V4U6R2_9ROSI; Uncharacterized protein
STRINGXP_006444621.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-104WRKY family protein