PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019786m
Common NameCICLE_v10019786mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 509aa    MW: 56365.3 Da    PI: 10.1348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019786mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15316361555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+  Er+RRd+iN+++  L+el+P++      K++Ka++Le+A++Y+k Lq
  Ciclev10019786m 316 HKRYERKRRDKINKKMRALQELIPNC-----NKVDKASVLEEAIDYLKTLQ 361
                      8999*********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-13305364No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-18308371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.945311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-14317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSNQEFLELV WEDGQLRMRG SSKRTQKSTS SCIDHASRSS NARLENGGNT DTFPPKNENQ  60
HESLLEISYK SHFNAFSEHA TGYNIDYDDK LRKDSQVVPV HETTPTPTGN RQSRDSTPLK  120
RPRVKYSPNL LSLDVLKREP EKKREQPVNF SLFLRSPALR TSSRRGFSRA EPEKVQNKPR  180
LLSPAANGSA SVKGFQNQLN SADTNAELLQ PVPVTVPDVQ SEADYSRTSS LPAENTVKRK  240
LDAGKCIEPP VPSSSLCSLG ASNNNPACTT FNLKRRYEDT EVSACPCDQY EKKLERKAVT  300
VRGSKSNRKK RTPEVHKRYE RKRRDKINKK MRALQELIPN CNKVDKASVL EEAIDYLKTL  360
QFQVMMMSMG TGVCMPSMML PTGIIGMQQM HAVAPQMSHF PPMGIGMDGR MQMGAGCNPA  420
QFLMPPIPGA TAVPGIQMPG FPGQPLPMSM LRTPLGLMHK TNPVAGVSRA AASMEVKDSA  480
PLTNPGDSNQ NVEINKRNVE HHKIRPSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308323KKRTPEVHKRYERKRR
2319324ERKRRD
3320325RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.7230.0vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444629.10.0transcription factor APG
TrEMBLV4VWZ30.0V4VWZ3_9ROSI; Uncharacterized protein
STRINGXP_006444629.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.17e-37phytochrome interacting factor 3-like 1