PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019781m
Common NameCICLE_v10019368mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 510aa    MW: 57099.9 Da    PI: 4.8681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019781mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-5291361128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeelv++yL+ k++g++ e+ +vi+e+d++k ePwdLp  + +k++++ew+fF+++d+ky++g+r nrat++gyWkatgkd+++
  Ciclev10019781m   9 LPLGFRFRPTDEELVDFYLRMKINGHNDEV-SVISEIDVCKREPWDLPdlSVIKTKDREWFFFCPQDRKYPNGHRLNRATAAGYWKATGKDRKI 101
                      699************************999.99**************9644889999************************************* PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s +++l+g+kktLvf+ grapkg++t+Wvmheyr+
  Ciclev10019781m 102 KS-GNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRA 136
                      **.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-614159IPR003441NAC domain
PROSITE profilePS5100556.7769159IPR003441NAC domain
PfamPF023654.1E-2710135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAVLSLNSLP LGFRFRPTDE ELVDFYLRMK INGHNDEVSV ISEIDVCKRE PWDLPDLSVI  60
KTKDREWFFF CPQDRKYPNG HRLNRATAAG YWKATGKDRK IKSGNHLIGM KKTLVFHMGR  120
APKGKRTNWV MHEYRATADD LDGTKPGQSA FVLCRLFKKQ DESVEICVEV EPSESSPTSA  180
RSEFALDQTL LDCKPSVSHL AEKVTSNLQE CQTKSSEFTA TEIDQAMQEN FGDVFTTVML  240
EPLDCTLFPP LHSPSPVEKG SSSISHSVRN DLTTIDEKGQ LPSESDAYIT EFLDSILNTS  300
DENLFDESDC QWNSFFVSET PSNMTFVKDS GSCSESDAEV AQARPNPDIT SSLCFKDNIA  360
RASPLKMLRM PEDFRTVTSQ NSDNEPSINF RNSCYLDDFC NADVESCEQD VFSSVSTTGQ  420
FHDAFGGFGD SNNHAVGVAS RNIVATGIRT RMRNPQSLPY REGFVNVKQG DAPRRLRLQC  480
KLQVGPVRLQ SCMPEEDESK PIVAEVRSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-47416315172NAC domain-containing protein 19
3swm_B1e-47416315172NAC domain-containing protein 19
3swm_C1e-47416315172NAC domain-containing protein 19
3swm_D1e-47416315172NAC domain-containing protein 19
3swp_A1e-47416315172NAC domain-containing protein 19
3swp_B1e-47416315172NAC domain-containing protein 19
3swp_C1e-47416315172NAC domain-containing protein 19
3swp_D1e-47416315172NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.197730.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441280.10.0NAC domain-containing protein 62 isoform X3
TrEMBLV4TX560.0V4TX56_9ROSI; Uncharacterized protein
STRINGXP_006441279.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-93NAC domain containing protein 62