PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019607m
Common NameCICLE_v10019614mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 543aa    MW: 60289 Da    PI: 6.4582
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019607mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.3e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Ciclev10019607m  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-11545No hitNo description
CDDcd002023.74E-17654No hitNo description
Gene3DG3DSA:3.30.50.102.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003207.1E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.5E-9282367IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSKVKSISI NKNKDVKVLK RKSNYDNVVV GGFAPDYNHG YRKVVDEDTS NRSSSGSAIS  120
NSESCVQFGS ADASDLTGPA QSNVWDSVVP SKKRTCVNRP KQSPVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VENKQYLVNE  240
SYSRSATLHV YNDYQGVNFS SRNMDKAKNF IEQGMQQDQL KRDKSQQEKL QILGSHNSPL  300
CEIDLNDILN FKEFVGHLTH EEQQQLLKYL PLNDTTVFPD SLNSMFDSLQ FKENISSFQQ  360
LLAEGVFDLS FLGVATEDCR TLKRLALSNL TTSNWVEHYQ SLKKCKSGTG GSYVSRGPDA  420
AASNNIINAK RLRDGQNQKF PEAKNIMKSP KRVTVKATYE NKEFMENDGS CFSPRSLFAL  480
PSDGSSLMLE SLHFVDESSD QDLLLDVPSN GSFPQAELLH PSLSFGQQAS SSSSAYPNHA  540
RP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440183.10.0GATA transcription factor 26
SwissprotQ8W4H11e-165GAT26_ARATH; GATA transcription factor 26
TrEMBLV4SZX20.0V4SZX2_9ROSI; Uncharacterized protein
STRINGXP_006440183.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-157GATA transcription factor 26