PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019585m
Common NameCICLE_v10019585mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 547aa    MW: 59401.5 Da    PI: 6.8323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019585mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-15333379455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+k Lq
  Ciclev10019585m 333 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKALQ 379
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-20327393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.911329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-15332383No hitNo description
Gene3DG3DSA:4.10.280.106.3E-20333386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-13333379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-17335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MNHCVPDFEF DDDHSIPTSS VLNRPRKSAM AEEDVMELLW QNGPVVLHNQ NQRSLKKSQP  60
SFPADQSAPR EIPSSHHHQQ EQQDHLFMQE DEMASWLHYP LNDTNFDSDF CTDLLYPAPC  120
ITSTTTTTAT ATATPPVRAT RVRDSRPQLN TATTVASAPP LRPPIPPPPR RTENFGLFAR  180
HMPREVASGP SNSKSVTIRE STVVDSSDTP APGPDSRASE AMRSMEGASG VNNNNRCRNT  240
SGAGAAATSS GGGGGSSGAR DLTMCEMTVT SSPGGSSASA EPPAQKPAAE DRKRKGRETD  300
DEYHSEDVEL ESADAKKQSR GSTSAKRSRA AEVHNLSERR RRDRINEKMR ALQELIPRCN  360
KSDKASMLDE AIEYLKALQL QVQMMSVGCG VVPMMFPGVQ QYMPNMGMGI GMGMGMGMGM  420
DMGMSRPMMP FPNVLAGSAM PTPAAAAHLG PRFPMPPFHM PPVPGPDPSR VQAANHSDPM  480
FNSFGMQNPN QARASNFVDP YQQYLALHRM QLPLQQNQSM VQPNASKPST SKGAENRENP  540
ENHPSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443674.10.0transcription factor PIF1
RefseqXP_006480181.10.0transcription factor PIF1 isoform X2
TrEMBLV4VUI50.0V4VUI5_9ROSI; Uncharacterized protein
STRINGXP_006443673.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-65phytochrome interacting factor 3-like 5