PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019373m
Common NameCICLE_v10019373mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 605aa    MW: 69090.7 Da    PI: 5.3493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019373mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016299320122
                      EEETTTTEEESSHHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                      + C  Cgk F++  + ++H ++
  Ciclev10019373m 299 FYCVLCGKKFKSEKQWTNHEQS 320
                      78*****************876 PP
2zf-C2H2130.00032575593220
                      EETTTTEEESSHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                      +C++Cg+ F ++  L++H+
  Ciclev10019373m 575 VCEKCGQEFETRNKLHKHL 593
                      6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.41E-22385IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.0E-23378IPR001623DnaJ domain
SMARTSM002718.8E-21668IPR001623DnaJ domain
CDDcd062575.43E-16765IPR001623DnaJ domain
PROSITE profilePS5007618.973776IPR001623DnaJ domain
PfamPF002262.6E-20873IPR001623DnaJ domain
PRINTSPR006253.8E-14927IPR001623DnaJ domain
PRINTSPR006253.8E-142742IPR001623DnaJ domain
PRINTSPR006253.8E-144868IPR001623DnaJ domain
PROSITE patternPS0063605372IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.88E-14288341No hitNo description
SMARTSM004519.5E-6296330IPR003604Zinc finger, U1-type
SMARTSM003550.39299323IPR015880Zinc finger, C2H2-like
PfamPF121711.0E-10299324IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.141299328IPR007087Zinc finger, C2H2
PROSITE patternPS000280301323IPR007087Zinc finger, C2H2
SMARTSM003553.6574598IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349574603IPR007087Zinc finger, C2H2
PROSITE patternPS000280576598IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MASEKRCLYE VLGLRKECTT DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELVHAY  60
EVLSDPKERA WYDSHRSQIL FSDLNSASNC GPVPNLYSYF SNTAFSGYSD SGKGFYKVYS  120
DLFNKIYLVE VSYVKKLGLG LDVLREAPIM GNLESPYGQV TAFYNYWLGF STVMDFCWVD  180
EYDVMAGPNR KSRRVMEEEN KKLRKKAKRE YNETVRELAA FVKKRDKRVM DMMVKKNEEI  240
ERKREEEKER KKRLEKERME RAKRYEEPAW ARIDDEGDNE VGNEEGLEEE EIEKKRSEFY  300
CVLCGKKFKS EKQWTNHEQS KKHKEKVADL RESFVDEDEV MADFGELDGE VEELGERFKD  360
NVGVEEREIG SGVGGLSGDE DVESEFFDVA DGVEVNEVDD RFGKEDEDED EDADDEVNML  420
KAMLSGHKNR KRVAVRKEDE VLKTEAHVEN EIGESEFMEY DNCKSMRRKN KKDRGKKSGG  480
EAANGEAAKG DRDGFKSTNE EANGHHNSGV IEESSSHSCV GNKNNGISDN HSEKDPKIPD  540
QPVDGKGTKK DRKAKLKNSS KGNKTKAASK NSSNVCEKCG QEFETRNKLH KHLGDTGHAS  600
LKFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440748.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLV4T1D60.0V4T1D6_9ROSI; Uncharacterized protein
STRINGXP_006440748.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-167DNAJ heat shock N-terminal domain-containing protein