PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019368m
Common NameCICLE_v10019368mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 606aa    MW: 67519.6 Da    PI: 4.8891
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019368mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-5291361128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeelv++yL+ k++g++ e+ +vi+e+d++k ePwdLp  + +k++++ew+fF+++d+ky++g+r nrat++gyWkatgkd+++
  Ciclev10019368m   9 LPLGFRFRPTDEELVDFYLRMKINGHNDEV-SVISEIDVCKREPWDLPdlSVIKTKDREWFFFCPQDRKYPNGHRLNRATAAGYWKATGKDRKI 101
                      699************************999.99**************9644889999************************************* PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s +++l+g+kktLvf+ grapkg++t+Wvmheyr+
  Ciclev10019368m 102 KS-GNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRA 136
                      **.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-614159IPR003441NAC domain
PROSITE profilePS5100556.7769159IPR003441NAC domain
PfamPF023655.6E-2710135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAVLSLNSLP LGFRFRPTDE ELVDFYLRMK INGHNDEVSV ISEIDVCKRE PWDLPDLSVI  60
KTKDREWFFF CPQDRKYPNG HRLNRATAAG YWKATGKDRK IKSGNHLIGM KKTLVFHMGR  120
APKGKRTNWV MHEYRATADD LDGTKPGQSA FVLCRLFKKQ DESVEICVEV EPSESSPTSA  180
RSEFALDQTL LDCKPSVSHL AEKVTSNLQE CQTKSSEFTA TEIDQAMQEN FGDVFTTVML  240
EPLDCTLFPP LHSPSPVEKG SSSISHSVRN DLTTIDEKGQ LPSESDAYIT EFLDSILNTS  300
DENLFDESDC QWNSFFVSET PSNMTFVKDS GSCSESDAEV AQARQPNPDI TSSLCFKDNI  360
ARASPLKMLR MPEDFRTVTS QNSDNEPSIN FRNSCYLDDF CNADVESCEQ DVFSSVSTTG  420
QFHDAFGGFG DSNNHAVGVA SRNIVATGIR TRMRNPQSLP YREGFVNVKQ GDAPRRLRLQ  480
CKLQVGPVRL QSCMPEEDES KPIVAEGVAD AEKELPVNAA TGAMYELKGD SQLASNENSN  540
ISEEQTTDER TKGRLKSTVL MDKDTSNTFR AGHSNHSFAV LFRAAAVVVM FAILVSTWRC  600
LCLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48816316169NO APICAL MERISTEM PROTEIN
1ut4_B5e-48816316169NO APICAL MERISTEM PROTEIN
1ut7_A5e-48816316169NO APICAL MERISTEM PROTEIN
1ut7_B5e-48816316169NO APICAL MERISTEM PROTEIN
3swm_A6e-48816319172NAC domain-containing protein 19
3swm_B6e-48816319172NAC domain-containing protein 19
3swm_C6e-48816319172NAC domain-containing protein 19
3swm_D6e-48816319172NAC domain-containing protein 19
3swp_A6e-48816319172NAC domain-containing protein 19
3swp_B6e-48816319172NAC domain-containing protein 19
3swp_C6e-48816319172NAC domain-containing protein 19
3swp_D6e-48816319172NAC domain-containing protein 19
4dul_A5e-48816316169NAC domain-containing protein 19
4dul_B5e-48816316169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.197730.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441279.10.0NAC domain-containing protein 62 isoform X2
TrEMBLV4VNL90.0V4VNL9_9ROSI; Uncharacterized protein
STRINGXP_006441279.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.17e-94NAC domain containing protein 62