PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019282m
Common NameCICLE_v10019282mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 633aa    MW: 70309.4 Da    PI: 4.6013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019282mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.3e-5291391127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+ePwdLp  + +k+e+ ew+fF++rd+ky++g r+nrat++gyWkatgkd+++
  Ciclev10019282m   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-EVIPEIDVCKLEPWDLPglSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTI 101
                      699************************999.99***************6447888999************************************ PP

              NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                       s+   +++ +g+kktLvfy+grapkge+t+W+mheyr
  Ciclev10019282m 102 RSRkagTNACIGMKKTLVFYRGRAPKGERTNWIMHEYR 139
                      **96655566***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-604165IPR003441NAC domain
PROSITE profilePS5100558.1089165IPR003441NAC domain
PfamPF023651.2E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAVISMESLP LGFRFRPTDE ELINHYLRLK INGRDSEVEV IPEIDVCKLE PWDLPGLSVI  60
KTEDPEWFFF CPRDRKYPNG LRSNRATEAG YWKATGKDRT IRSRKAGTNA CIGMKKTLVF  120
YRGRAPKGER TNWIMHEYRP TREDLLDSST KPSQAAFVLC RLFRKPEEKV DVLKYDEVEQ  180
TESPDTNKSS LDDTSSDLVQ ETAMSNYVTP NAVLPVESCG NSHITSDVED HSTGGTVLEE  240
YQVPGEILNQ FDMPSNGQID CKIFSPVQSQ IHPDIAAYMD SPFASDFGND HFGLNFKDGA  300
GELDVSLTEL FDEVFNYQDE FSCAESINQK ELDVKSEVQL PGQVYMPQTI SPRNFHAQDN  360
GTCSDTDTDM SQVQQCDLVM GSSRLFSEHV ESKDLLQAPS CFGSCQAEAS LNDQEIGKGT  420
ICDYGDNSAV QVASSAVGSL YGNLNNYDLS PTLNNSVNYG GDFAVGTGIK IRTRQPQQRP  480
NSFNSVNQGT AQRRLRLQVT LSPPMVGGDK QKDLGHSVED DEVQSGVTKI NEIAEQSHTY  540
VRADGEDGES QALRGDKIKE IKEESSANLR LRVKHDGESG NCKVEPSQFV EAPSIHCGQS  600
LSLVYKLSIL LVIIFFITFT GMWKSAVRAL CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-45416512165NO APICAL MERISTEM PROTEIN
1ut4_B3e-45416512165NO APICAL MERISTEM PROTEIN
1ut7_A3e-45416512165NO APICAL MERISTEM PROTEIN
1ut7_B3e-45416512165NO APICAL MERISTEM PROTEIN
4dul_A3e-45416512165NAC domain-containing protein 19
4dul_B3e-45416512165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.122150.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439176.10.0protein NTM1-like 9
TrEMBLV4TR990.0V4TR99_9ROSI; Uncharacterized protein
STRINGXP_006439176.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-126NAC 014