PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10019135m | ||||||||
Common Name | CICLE_v10019118mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 688aa MW: 76147 Da PI: 4.7247 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.1e-14 | 485 | 531 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Ciclev10019135m 485 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 531 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.6E-54 | 10 | 187 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.809 | 481 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-18 | 482 | 540 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.94E-16 | 485 | 535 | No hit | No description |
Pfam | PF00010 | 1.1E-11 | 485 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 485 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-17 | 487 | 536 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MDAPPPSSRL QSILQEAVQS VQWTYSLFWQ ICPQQGILIW GDGYYNGAIK TRKTVQPMEV 60 SAEEASLQRS QQLRELYESL SAGETNQPTR RPSAALSPED LTESEWFYLM CVSFSFPSGV 120 GLPGKAYARQ QHVWLTGANE VDSKTFSRAI LAKTVVCIPF LDGVVELGTT EKVPEDLALV 180 QHVKSLFIDD HQGHLHPPKP ALSEHSTSNP DTSSCHLRFH SQSMSPMCAA VNDDPPVNAN 240 QGEEDDEEED DDDDDEEQDQ SDSEAETGRN SRQGAADQIP EAVVPPVPEP SELMQLDMSE 300 DIRLGSPDDG SNNLDSDFHL LAVSQGVNPA DDQQQRGDSH RAESSRTWPM ALQEPVMIGS 360 SLQLPPSGQI PPEEELTPED THYSQTISTI LQKQPTRWAE SSYVTYSSTQ SAFAKWTDRS 420 DHLLAVPVPV EGTSQWVLKY VLFTVPYLHS KYRDENSPKL GDVGGDPASR FRKGTGTPQD 480 EMSANHVLAE RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKIQDLESR 540 NINNQILEGD QRSRSADGSK DQRVLDRNAR VGSGKRKLRK VEGSGGGAKP KSVDSPPPPV 600 ATSVQVSIIE SDALVELQCG NKEGLLLDIM QMLRELLIEV TAVQSFLTNG VFTAQLRAKV 660 KDNVNGKKAS IVEVKRAINQ IIPQYVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-22 | 9 | 187 | 12 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-22 | 9 | 187 | 12 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-22 | 9 | 187 | 12 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-22 | 9 | 187 | 12 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 489 | 494 | ERRRRE |
2 | 490 | 495 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT757350 | 0.0 | KT757350.1 Citrus sinensis bHLH protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479737.1 | 0.0 | basic helix-loop-helix protein A isoform X2 | ||||
Refseq | XP_024045500.1 | 0.0 | basic helix-loop-helix protein A isoform X2 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | V4TV03 | 0.0 | V4TV03_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479736.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444093.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 6e-95 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10019135m |
Entrez Gene | 18047507 |
Publications ? help Back to Top | |||
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