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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10019130m | ||||||||
Common Name | CICLE_v10019130mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 691aa MW: 77162.4 Da PI: 6.7344 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.8e-09 | 455 | 492 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Ciclev10019130m 455 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 492 554459******************************88 PP | |||||||
2 | BELL | 119.4 | 1.6e-38 | 316 | 387 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi Ciclev10019130m 316 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 387 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-61 | 254 | 385 | IPR006563 | POX domain |
Pfam | PF07526 | 6.1E-48 | 260 | 383 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 433 | 496 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-9 | 436 | 500 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-11 | 436 | 497 | No hit | No description |
SuperFamily | SSF46689 | 6.42E-17 | 437 | 502 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 439 | 502 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.4E-18 | 453 | 492 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MARELCEDKS RNIISSGGFC YSDVSSSNPT LHQTHMMNQI QGFEGNHEIF NLTTGMEMIG 60 FSKNLQQHTS DNNSVMWKEF FNNKPAGNNP GPSSSKTINE STTSDHHFYQ HDHQFNKQDF 120 TTGMSETSGE NLIVGHDHSD VAGAWQENNS RLLVDDSSLR CVFPCEGNER PSQGLSLSLS 180 SSNPSSIGLQ SFELRQTNHN DHDHQQDDMR FISSSTSREG FFGKPAAGIQ QQQQMMQDGF 240 LGKPAIPPNI HHQTGHQFQL RNSKYLAPAQ EILKEFCSLG TKQNDATKLK SNKAKQQWDD 300 ENAGSSSRKQ SLCSLEFMEL QKRKTKLLSM LEEVDRRYRH YCDQMKAVVS SFEAVAGNGA 360 ARVYSALASK AMSRHFRCLR DGIVGQIQAT KKAMGEKDPV APGTSRGETP RLKIIDQALR 420 QQRAFQQMSM MESHPWRPQR GLPERSVSVL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS 480 QVSNWFINAR VRLWKPMVEE MYLEETKEQD NNMASSDGAT DLDDNSGRPN QTQNPPADQK 540 PTQDQLVRID SECLSSIINN HDKNDANKNP NKALPSHHMQ QNFGSFGAME LDFSSYNQHT 600 VGGVSYANDS ANHQNFNGGS GGVSLTLGLQ QHGGSGVSLA FSPASQSSLF YPRDHIEDCQ 660 QVQYSLLDGE GQNLPYRNLM GAQLLHDLAG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 442 | 500 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 442 | 500 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.22515 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439494.1 | 0.0 | homeobox protein BEL1 homolog isoform X1 | ||||
Swissprot | Q38897 | 1e-146 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | V4VJ91 | 0.0 | V4VJ91_9ROSI; Uncharacterized protein | ||||
STRING | XP_006439494.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-137 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10019130m |
Entrez Gene | 18046176 |
Publications ? help Back to Top | |||
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