PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10019127m | ||||||||
Common Name | CICLE_v10019118mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 693aa MW: 76683.6 Da PI: 4.7564 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.2e-14 | 490 | 536 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Ciclev10019127m 490 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 536 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.6E-58 | 10 | 192 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.809 | 486 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-18 | 487 | 545 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 490 | 546 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 490 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.31E-16 | 490 | 540 | No hit | No description |
SMART | SM00353 | 1.4E-17 | 492 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MDAPPPSSRL QSILQEAVQS VQWTYSLFWQ ICPQQGILIW GDGYYNGAIK TRKTVQPMEV 60 SAEEASLQRS QQLRELYESL SAGETNQPTR RPSAALSPED LTESEWFYLM CVSFSFPSGV 120 GLPGKAYARQ QHVWLTGANE VDSKTFSRAI LAKSAHIQTV VCIPFLDGVV ELGTTEKVPE 180 DLALVQHVKS LFIDDHQGHL HPPKPALSEH STSNPDTSSC HLRFHSQSMS PMCAAVNDDP 240 PVNANQGEED DEEEDDDDDD EEQDQSDSEA ETGRNSRQGA ADQIPEAVVP PVPEPSELMQ 300 LDMSEDIRLG SPDDGSNNLD SDFHLLAVSQ GVNPADDQQQ RGDSHRAESS RTWPMALQEP 360 VMIGSSLQLP PSGQIPPEEE LTPEDTHYSQ TISTILQKQP TRWAESSYVT YSSTQSAFAK 420 WTDRSDHLLA VPVPVEGTSQ WVLKYVLFTV PYLHSKYRDE NSPKLGDVGG DPASRFRKGT 480 GTPQDEMSAN HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKKIQ 540 DLESRNINNQ ILEGDQRSRS ADGSKDQRVL DRNARVGSGK RKLRKVEGSG GGAKPKSVDS 600 PPPPVATSVQ VSIIESDALV ELQCGNKEGL LLDIMQMLRE LLIEVTAVQS FLTNGVFTAQ 660 LRAKVKDNVN GKKASIVEVK RAINQIIPQY VN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-23 | 9 | 192 | 12 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-23 | 9 | 192 | 12 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-23 | 9 | 192 | 12 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-23 | 9 | 192 | 12 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 494 | 499 | ERRRRE |
2 | 495 | 500 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT757350 | 0.0 | KT757350.1 Citrus sinensis bHLH protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444093.1 | 0.0 | basic helix-loop-helix protein A isoform X1 | ||||
Refseq | XP_024045499.1 | 0.0 | basic helix-loop-helix protein A isoform X1 | ||||
Refseq | XP_024953748.1 | 0.0 | basic helix-loop-helix protein A isoform X1 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | V4VVL5 | 0.0 | V4VVL5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479736.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444093.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-100 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10019127m |
Entrez Gene | 18047507 |
Publications ? help Back to Top | |||
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