PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019118m
Common NameCICLE_v10019118mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 695aa    MW: 76827.7 Da    PI: 4.7564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019118mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14492538455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Ciclev10019118m 492 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 538
                      7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-5810192IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.809488537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18489547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11492537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-18492548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.61E-16492542No hitNo description
SMARTSM003531.4E-17494543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDAPPPSSRL QSILQEAVQS VQWTYSLFWQ ICPQQGILIW GDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYESL SAGETNQPTR RPSAALSPED LTESEWFYLM CVSFSFPSGV  120
GLPGKAYARQ QHVWLTGANE VDSKTFSRAI LAKSAHIQTV VCIPFLDGVV ELGTTEKVPE  180
DLALVQHVKS LFIDDHQGHL HPPKPALSEH STSNPDTSSC HLRFHSQSMS PMCAAVNDDP  240
PVNANQGEED DEEEDDDDDD EEQDQSDSEA ETGRNSRQGA ADQIPEAVVP PVPEPSELMQ  300
LDMSEDIRLG SPDDGSNNLD SDFHLLAVSQ GVNPADDQQQ RGDSHRAESS RTWPMALQEP  360
VMIGSSLQLP PSGSGQIPPE EELTPEDTHY SQTISTILQK QPTRWAESSY VTYSSTQSAF  420
AKWTDRSDHL LAVPVPVEGT SQWVLKYVLF TVPYLHSKYR DENSPKLGDV GGDPASRFRK  480
GTGTPQDEMS ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKK  540
IQDLESRNIN NQILEGDQRS RSADGSKDQR VLDRNARVGS GKRKLRKVEG SGGGAKPKSV  600
DSPPPPVATS VQVSIIESDA LVELQCGNKE GLLLDIMQML RELLIEVTAV QSFLTNGVFT  660
AQLRAKVKDN VNGKKASIVE VKRAINQIIP QYVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-23919212192Transcription factor MYC3
4rqw_B2e-23919212192Transcription factor MYC3
4rs9_A2e-23919212192Transcription factor MYC3
4yz6_A2e-23919212192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496501ERRRRE
2497502RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7573500.0KT757350.1 Citrus sinensis bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444093.10.0basic helix-loop-helix protein A isoform X1
RefseqXP_024045499.10.0basic helix-loop-helix protein A isoform X1
RefseqXP_024953748.10.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A3Q8U7B90.0A0A3Q8U7B9_CITSI; Noemi
TrEMBLA0A411PZM20.0A0A411PZM2_CITLI; Basic helix-loop-helix transcription factor family protein
TrEMBLA0A411PZN50.0A0A411PZN5_CITAR; Basic helix-loop-helix transcription factor family protein
TrEMBLV4TAJ70.0V4TAJ7_9ROSI; Uncharacterized protein
STRINGXP_006479736.10.0(Citrus sinensis)
STRINGXP_006444093.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-99bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]