PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019059m
Common NameCICLE_v10018993mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 715aa    MW: 78770.9 Da    PI: 6.065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019059mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000595465831355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  Ciclev10019059m 546 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 583
                      77899************55......7777778999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-3611171IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.06E-5531588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115533582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-4544589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00322546583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MGTSSTTFDL HGILKSLCFN TAWKYAVFWK LKHRTRMVLT WEDGYYDNCG QQDSLENKCS  60
SESLENFHGG RYSHDPLGLA VAKMSYHVYS LGEGIVGQVA VTGKHQWIFS DQLVTNSCSS  120
FEFSDGWQSQ FSAGIRTIAV VAVVPHGVVQ LGSLDEVTED MKVVTHIRDV FAALNDISVG  180
HVSSTIQSSV KNTLSLPDLP TKSIPNRWHN LDEVVNRGGP DVQFPMFPYV EKHNDGSYAF  240
SGMQPKIGDG VVNRNEGILL SSAGGVGSAK ILHPKSNVIN LDYQNQMGIH FISDGMSRVE  300
SSGWKDLGVI SEQNGTPFSI NSVIDSINLC SVALQAEKFV ADRTYLASNP LEAVLGEQVK  360
LECTDSCQNG MLHIPEISDI KFEKDLEKLQ NQTELNHLDP SGMSLKFSAV SELHEALGPA  420
FLRKDIYNDR EPENTVDGET VGMPELTSSS HLMFDSGSEN LLDAVVASVC NSGSDVKSER  480
TVCRSMQSLL TTEKKPESSS QMSSKGFSST CPSTCSEQLD MSSEPAKNNK KRARTGENGR  540
PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML FLQSITKHAD KLSKCAESKM  600
HQKGNGIHGS NYEQGSSWAV EMGSHLKVCS IVVENLNKNG QMLVEMLCEE CSHFLEIAEA  660
IRSLGLTILK GVTEAHGDKT WICFVVEGQD NRIMHRMDVL WSLVQLLQSK TTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443867.10.0transcription factor EMB1444 isoform X3
RefseqXP_006479559.10.0transcription factor EMB1444 isoform X2
TrEMBLV4TUD00.0V4TUD0_9ROSI; Uncharacterized protein
STRINGXP_006479559.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-172conserved peptide upstream open reading frame 7