PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 794aa MW: 87461.6 Da PI: 6.7484

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018916m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	327.8	2.1e-100	430	792	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++L+++Ae v +g+++ aq +Larl++++ p g+p+qR+a+yf+eAL+ l+ +++ + p ++ ++ +++ ++ a+k+fsevsP+++f + Ciclev10018916m 430 LDQLYKAAELVGTGNFSHAQGILARLNHQVFPVGKPLQRAAFYFKEALQLFLLM-NNQVTN-PPLRSPTPVDVIFKMGAYKVFSEVSPLIQFIN 521 679***********************************************98.455554.5566666689****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +t+Nqa+lea++ ++r+Hi+Dfdi+ G+QW++++q+L+ R+ +g+ps++iT+++sp+++++ el ++e+L++fA+++gv+fe +v+ ++l++ Ciclev10018916m 522 FTCNQALLEALDDADRIHIVDFDIGFGAQWASFMQELSMRSnRGTPSMKITAFASPSTHHHIELGLMRENLTQFANAIGVSFELDVINFESLDQ 615 ************************************9899***************************************8888877 PP GRAS 189 l..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +l L+ +++Ea+aVn+ + + +++ +l+s +L++vk+lsPk+vv +++ +d ++ +F e++l+al+ y l++sl+a + Ciclev10018916m 616 TsyTLPILQSSENEAVAVNFPI--WSSSNQPSALPS----LLRFVKQLSPKIVVSADRGCDKSDLPFPEHILHALQSYINLLESLDAV-NVMPD 702 633667899999****99..444445666666....*****************************************665.34558 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +k+Er+ll+++i++vv + + ++ W+ + +aGF+pv++s+++++qa++++++++++g++ve++++slvl+W++r+L+s+SaWr Ciclev10018916m 703 ALNKIERFLLQPRIESVVLGRLRG----PGRMPMWKTVFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWR 792 899************99888....99999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.581	403	772	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-98	430	792	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MSVPSHLQEK CVFKIQDFTP ICSQGKWKQK HQQQQQVNNN SFCFSCNIDN EPTSVLHMRR 60 SQSPPTSAST LSSSLNNTNT TTTNSVPQEP VSPLLNNERK DEWATELLSM PNGLEVIPTG 120 AERCGLGLED WETMLSESGQ EQSILKWIAG DVDDSPFGLK QLLQSGGNGN GQNPFVDFDG 180 NAGGGGLGFV DQPPNFESVG GGGSLASGNF IATNLCAFPG SELLSNNNGN GKIGSSPGLV 240 NLNHKVVSGV GLNSSNSNNN CNYQNPIFGS PTSSNVSLAP VSLPPGVNIQ QSQNFVEAPE 300 EKPQILNPQI FMNNQQVQSQ HHQNPNFFFP VSAYPLHQEH HHHSHLLQPQ PKRHNSGGSL 360 DLSSPHVPKP PFSDPRHEFL LRNHQQQMGF SQNVHFLPQH LQQKSLIVSA KQKVLGPGSE 420 EISRQQHALL DQLYKAAELV GTGNFSHAQG ILARLNHQVF PVGKPLQRAA FYFKEALQLF 480 LLMNNQVTNP PLRSPTPVDV IFKMGAYKVF SEVSPLIQFI NFTCNQALLE ALDDADRIHI 540 VDFDIGFGAQ WASFMQELSM RSNRGTPSMK ITAFASPSTH HHIELGLMRE NLTQFANAIG 600 VSFELDVINF ESLDQTSYTL PILQSSENEA VAVNFPIWSS SNQPSALPSL LRFVKQLSPK 660 IVVSADRGCD KSDLPFPEHI LHALQSYINL LESLDAVNVM PDALNKIERF LLQPRIESVV 720 LGRLRGPGRM PMWKTVFASA GFSPVTFSNF TETQAECVVK RTPVRGFHVE KRQASLVLCW 780 QQRELISASA WRC*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MSVPSHLQEK CVFKIQDFTP ICSQGKWKQK HQQQQQVNNN SFCFSCNIDN EPTSVLHMRR  60
SQSPPTSAST LSSSLNNTNT TTTNSVPQEP VSPLLNNERK DEWATELLSM PNGLEVIPTG  120
AERCGLGLED WETMLSESGQ EQSILKWIAG DVDDSPFGLK QLLQSGGNGN GQNPFVDFDG  180
NAGGGGLGFV DQPPNFESVG GGGSLASGNF IATNLCAFPG SELLSNNNGN GKIGSSPGLV  240
NLNHKVVSGV GLNSSNSNNN CNYQNPIFGS PTSSNVSLAP VSLPPGVNIQ QSQNFVEAPE  300
EKPQILNPQI FMNNQQVQSQ HHQNPNFFFP VSAYPLHQEH HHHSHLLQPQ PKRHNSGGSL  360
DLSSPHVPKP PFSDPRHEFL LRNHQQQMGF SQNVHFLPQH LQQKSLIVSA KQKVLGPGSE  420
EISRQQHALL DQLYKAAELV GTGNFSHAQG ILARLNHQVF PVGKPLQRAA FYFKEALQLF  480
LLMNNQVTNP PLRSPTPVDV IFKMGAYKVF SEVSPLIQFI NFTCNQALLE ALDDADRIHI  540
VDFDIGFGAQ WASFMQELSM RSNRGTPSMK ITAFASPSTH HHIELGLMRE NLTQFANAIG  600
VSFELDVINF ESLDQTSYTL PILQSSENEA VAVNFPIWSS SNQPSALPSL LRFVKQLSPK  660
IVVSADRGCD KSDLPFPEHI LHALQSYINL LESLDAVNVM PDALNKIERF LLQPRIESVV  720
LGRLRGPGRM PMWKTVFASA GFSPVTFSNF TETQAECVVK RTPVRGFHVE KRQASLVLCW  780
QQRELISASA WRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-31	448	792	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440333.1	0.0	scarecrow-like protein 6
TrEMBL	V4T0B5	0.0	V4T0B5_9ROSI; Uncharacterized protein
STRING	XP_006440333.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-125	GRAS family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018916m
Entrez Gene	18050000