PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1080aa MW: 119897 Da PI: 8.8743

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018617m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23	1.4e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F+ + +s++e +e++++ g+t +qVk +F +R++ +k Ciclev10018617m 69 KRPRDLLNPKAVKYMQEVFALKDAISKKESREISAQFGVTVTQVKDFFASQRTRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.365	66	126	IPR001356	Homeobox domain
SMART	SM00389	5.0E-5	68	130	IPR001356	Homeobox domain
CDD	cd00086	3.24E-5	69	125	No hit	No description
Pfam	PF00046	4.5E-5	69	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-7	69	133	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-7	69	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	4.4E-6	250	345	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	1.33E-6	251	346	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1080 aa Download sequence Send to blast
MEALKENSME IEIGSSAESF QKFLDSQSEL FHSQIEKLQN VVVTQCRLTG ANPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQEVFALK DAISKKESRE ISAQFGVTVT QVKDFFASQR 120 TRVRKLVRLS KEKAIKSDAR KDSHNVMVPV SSDFVIPISS DYVIPTDPVP SSSACPTSVI 180 PVNPIPLNSI GPLKVDEAPS CSGRDECQLG LDDLDKHFVE NFFSLMRKEE TFSGQVKLME 240 QILRIENSSI LYWFLTKGGV MILATWLSQA ADEEQTSVLI VILNVLCHLP LQKALPEQMS 300 AILQSVKRLR YYRASDLSNR ANVLLSKWSK MFSRSQALKK HGAKHSTDSQ NELILKQSIG 360 EIMADESWLS SSNASENSLA TLCESSESFR KSESPQSVKL LTASSDDSGR KNILGVSSSY 420 NRERRKTQFV EQPGQKSAGR SLQASRLAPV GQARPMSADD IQKAKLKAMY KRQNKYGKTS 480 FLSNGINEVK AEGLEKSTTQ ATNFPPISKV LVRPHIEEFK KSVTPEPKIS SRPEAPLDPE 540 QKKDVEMPPE EKLKIVFKEP SEEKQKIGVK EPPQEKQKME VKESSQEKWL RVQIPWQTPP 600 EVKLNTHWRV GNGENSKEVE VQKNRIHRET ETICHKIQEI PCNPKEPWDL EMDYDDTLTP 660 ELPIEQPPDA DSVEETQFPS DNVTLNNAAP SLPIPSQIAP PPQIANASAS AAEPDLELLA 720 VLLKNPELVF ALTTGQAGNL SSEDTVKLLD MIKSGGAGAG LASNVNGMRG KVEEKVEVSL 780 PSPTPSSNPG TSGWRQDVVR NPFSRGSPME SNVVLSSLEV ASTEKLHTTN VIRSGISAMN 840 VTIPQQPTSA MHPSLHQTIP ERQLHSVVPS LRQSHSISSP IVQTQAMKNL PNASPSYISN 900 VKAAPMHINA PERQPVSHPS PTLIPTSARS QPQLQPQQPH MSNPTHVASL YPSRQPMGNS 960 GPASESWQAS QRLASNSRYQ VNQNNYNGSF GGPMQRRQVL SGPPRERNGY AGNDGFESWS 1020 PDNSPTRPPE YEPRRNLQEP RMNSGWSNGP DRSRQWNTSE QREVRDHNKY GYTWRDRRH*

Sequence ? help Back to Top

Protein Sequence Length: 1080 aa Download sequence Send to blast

MEALKENSME IEIGSSAESF QKFLDSQSEL FHSQIEKLQN VVVTQCRLTG ANPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQEVFALK DAISKKESRE ISAQFGVTVT QVKDFFASQR  120
TRVRKLVRLS KEKAIKSDAR KDSHNVMVPV SSDFVIPISS DYVIPTDPVP SSSACPTSVI  180
PVNPIPLNSI GPLKVDEAPS CSGRDECQLG LDDLDKHFVE NFFSLMRKEE TFSGQVKLME  240
QILRIENSSI LYWFLTKGGV MILATWLSQA ADEEQTSVLI VILNVLCHLP LQKALPEQMS  300
AILQSVKRLR YYRASDLSNR ANVLLSKWSK MFSRSQALKK HGAKHSTDSQ NELILKQSIG  360
EIMADESWLS SSNASENSLA TLCESSESFR KSESPQSVKL LTASSDDSGR KNILGVSSSY  420
NRERRKTQFV EQPGQKSAGR SLQASRLAPV GQARPMSADD IQKAKLKAMY KRQNKYGKTS  480
FLSNGINEVK AEGLEKSTTQ ATNFPPISKV LVRPHIEEFK KSVTPEPKIS SRPEAPLDPE  540
QKKDVEMPPE EKLKIVFKEP SEEKQKIGVK EPPQEKQKME VKESSQEKWL RVQIPWQTPP  600
EVKLNTHWRV GNGENSKEVE VQKNRIHRET ETICHKIQEI PCNPKEPWDL EMDYDDTLTP  660
ELPIEQPPDA DSVEETQFPS DNVTLNNAAP SLPIPSQIAP PPQIANASAS AAEPDLELLA  720
VLLKNPELVF ALTTGQAGNL SSEDTVKLLD MIKSGGAGAG LASNVNGMRG KVEEKVEVSL  780
PSPTPSSNPG TSGWRQDVVR NPFSRGSPME SNVVLSSLEV ASTEKLHTTN VIRSGISAMN  840
VTIPQQPTSA MHPSLHQTIP ERQLHSVVPS LRQSHSISSP IVQTQAMKNL PNASPSYISN  900
VKAAPMHINA PERQPVSHPS PTLIPTSARS QPQLQPQQPH MSNPTHVASL YPSRQPMGNS  960
GPASESWQAS QRLASNSRYQ VNQNNYNGSF GGPMQRRQVL SGPPRERNGY AGNDGFESWS  1020
PDNSPTRPPE YEPRRNLQEP RMNSGWSNGP DRSRQWNTSE QREVRDHNKY GYTWRDRRH*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444261.2	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A067HH03	0.0	A0A067HH03_CITSI; Uncharacterized protein
STRING	XP_006479899.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018617m

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]