PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 317aa MW: 35027.9 Da PI: 8.0979

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018230m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.8	1.1e-33	172	229	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++C vkk+vers edp++v++tYeg+H h+ Ciclev10018230m 172 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHP 229 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-35	156	231	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-30	163	231	IPR003657	WRKY domain
PROSITE profile	PS50811	31.709	166	231	IPR003657	WRKY domain
SMART	SM00774	1.7E-39	171	230	IPR003657	WRKY domain
Pfam	PF03106	9.4E-27	172	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MRNGTKKDIY YRALFQPNVN IEAAARPGVS VAASSSSPDY VSPQEFDPSQ MNFTDCFHGL 60 MDYNSLEKAF TGMSPSSSEV FSSVEGNQKQ VKDLLIPNSS ISSSSAEAGG EEDSHSGKST 120 QKDDQALQSP KDHGHGGESS KKIEKKNNKK GEKKQKEPRV AFMTKSEVDH LEDGYRWRKY 180 GQKAVKNSPF PRSYYRCTTQ KCGVKKRVER SYEDPSIVIT TYEGQHSHPL PTTLRGNAAG 240 IFQSSSMLTP TPMNVSSFPQ DQWLGYSNFM PAMTHNQTAA PGPNAFATHP LDDHQLPDNF 300 GLLQDIAPSV FFKREP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-29	161	231	7	77	Probable WRKY transcription factor 4
2lex_A	2e-29	161	231	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047091.1	0.0	probable WRKY transcription factor 71
Swissprot	Q8VWJ2	6e-64	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	V4W9B8	0.0	V4W9B8_9ROSI; Uncharacterized protein
STRING	XP_006449634.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-52	WRKY DNA-binding protein 28

Link Out ? help Back to Top
Phytozome	Ciclev10018230m
Entrez Gene	18053254

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]