PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018153m
Common NameCICLE_v10018153mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 681aa    MW: 74812.2 Da    PI: 5.6946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018153mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.43.1e-1353156791374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilk 92 
                      lv+lLl+cAeav+++d+ la+++L +l+  +sp gd+mqR+a++fteAL+arla + ++  ++ +p++ s  + ns e+l+++++ ++++P++k
  Ciclev10018153m 315 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSpfPPNSLEVLKIYQIVYQACPYVK 408
                      68****************************************************9544433333333333003569****************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+ +etg+ L+++A++l+vpfef++ v ++l
  Ciclev10018153m 409 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGA----TIESAKETGRCLTELAHSLHVPFEFHP-VGEQL 497
                      *********************************************************....99*************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      edl++++++ + gEalaVn v +lhr++  s +l +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s 
  Ciclev10018153m 498 EDLKPHMFNRRVGEALAVNAVNRLHRVP--SNCLGN----LLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSA 585
                      ***************************9..666666....****************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e  GF+ vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+L+++SaWr
  Ciclev10018153m 586 QRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWR 679
                      *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.125289659IPR005202Transcription factor GRAS
PfamPF035141.1E-132315679IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MINSVCGTVG TLKSENSSSS IKIHPTSPNE SSISETKRTP QSSDLEQPSS LTPPSLNFPP  60
LKFEIDGDVE VQSPDCSIWE TFFSDHLDGD FMISSPVRNL PSPRTSAYNN NYNYNYAQSM  120
QGQSLSGCSP PRFSAQVGAF SSSLRAKGQS PLHKVFNSPG NQYMQPENLA LTTAIEDFLE  180
DYQKDGYGMF SPMKICGGGG GGGSSPQLID MPTTVPATLE CLPMTNNNPS RFSGPVSESS  240
STAGASQHDN DIYQMGSIAA APLSQQLQQE QLQERQQTQQ QQLQAQQQQQ QNLNHSLMVP  300
LPISSEQEQD SGLQLVHLLL ACAEAVAKED FMLARRYLHH LNRVVSPLGD SMQRVASCFT  360
EALSARLAAT LTTKPSTSTP TPFSPFPPNS LEVLKIYQIV YQACPYVKFA HFTANQAIFE  420
AFEAEERVHV IDLDILQGYQ WPAFMQALAA RPGGAPFLRI TGVGATIESA KETGRCLTEL  480
AHSLHVPFEF HPVGEQLEDL KPHMFNRRVG EALAVNAVNR LHRVPSNCLG NLLAMIRDQA  540
PNIVTIVEQE ASHNGPYFLG RFLEALHYYS AIFDSLDATF PPDSAQRAKV EQYIFAPEIR  600
NIVACEGGER TARHERLEKW RKIMEGKGFR GVPLSANAVT QSKILLGLYS CDGYRLTEDN  660
GCLLLGWQDR ALLAASAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1003036787378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447014.10.0DELLA protein RGL1
RefseqXP_006470106.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLV4W2V40.0V4W2V4_9ROSI; Uncharacterized protein
STRINGXP_006470106.10.0(Citrus sinensis)
STRINGXP_006447014.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-95RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]