PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018145m

Common Name

CICLE_v10018145mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 281aa MW: 32141.3 Da PI: 10.7754

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018145m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5e-32	36	89	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH++Fv+a+e+LGG+e+AtPk +l++m+vkgLt++hvkSHLQ+YR+ Ciclev10018145m 36 PRLRWTADLHRSFVHAIERLGGEERATPKLVLQIMGVKGLTISHVKSHLQMYRS 89 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-30	32	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.769	32	92	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-15	34	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	36	89	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-8	37	88	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MNSTRLRTID DYKNKNPPQS SLKSPSVRPY VRSKMPRLRW TADLHRSFVH AIERLGGEER 60 ATPKLVLQIM GVKGLTISHV KSHLQMYRSL KYEQMIHEAA KATNKNDKVL EAPTTACQQD 120 QHPTKCLSWR KNKNNTQKHQ GFGTQRYNEG LGHHLMNNAN IPPAYWSVMM LITVISAKKL 180 VLLDICISNQ SVGISNSVYF KIICRKGKHP IWINGRQVMF NEPLSYGRVT KKQMERTDNS 240 FLLFNDQLKN CATQQVNFSP SSSLRQNKLI LKHCSKLAKI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	37	92	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046772.1	1e-155	probable transcription factor KAN4
TrEMBL	V4UFN8	0.0	V4UFN8_9ROSI; Uncharacterized protein
STRING	XP_006449755.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018145m
Entrez Gene	18050461