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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10018138m | ||||||||
Common Name | CICLE_v10018138mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22460.7 Da PI: 5.9706 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.4 | 5e-25 | 38 | 86 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien+s r+v fskRr+g++KKA+EL+ LCdae+a+i+fs++g+ly + Ciclev10018138m 38 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDAEIAIIVFSPKGRLYSF 86 79*********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-31 | 30 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.675 | 30 | 90 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-25 | 31 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-23 | 32 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 39 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-23 | 52 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-23 | 67 | 88 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAAKAESSRS LPPSWVSSTV IMPKKKPKGT GRKKIEIKRI ENNSSRKVAF SKRRKGMFKK 60 ASELCRLCDA EIAIIVFSPK GRLYSFGDHV IDKFIEDEIV SDIHSSSSSK EAIKENDCVT 120 ELTGEEKSEE EDTREEQTEL EFWWEQPIED LNMEELEKYK SCLEELRRNV AMKVEEMVMR 180 RTCEKDFLGI RDKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449753.1 | 1e-139 | agamous-like MADS-box protein AGL28 | ||||
TrEMBL | V4TR25 | 1e-137 | V4TR25_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449753.1 | 1e-138 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-22 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10018138m |
Entrez Gene | 18050762 |