|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Ciclev10018138m |
Common Name | CICLE_v10018138mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
Family |
M-type_MADS |
Protein Properties |
Length: 195aa MW: 22460.7 Da PI: 5.9706 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10018138m | genome | ICGC | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 78.4 | 5e-25 | 38 | 86 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
krien+s r+v fskRr+g++KKA+EL+ LCdae+a+i+fs++g+ly +
Ciclev10018138m 38 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDAEIAIIVFSPKGRLYSF 86
79*********************************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MAAKAESSRS LPPSWVSSTV IMPKKKPKGT GRKKIEIKRI ENNSSRKVAF SKRRKGMFKK 60 ASELCRLCDA EIAIIVFSPK GRLYSFGDHV IDKFIEDEIV SDIHSSSSSK EAIKENDCVT 120 ELTGEEKSEE EDTREEQTEL EFWWEQPIED LNMEELEKYK SCLEELRRNV AMKVEEMVMR 180 RTCEKDFLGI RDKA*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-14 | 31 | 113 | 2 | 85 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |