PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018090m

Common Name

CICLE_v10018090mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 339aa MW: 37988.1 Da PI: 6.2881

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018090m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.3	3.4e-08	134	192	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A r +RKk +i Le k+ +L + ++L +l l+ e+ +l++e+ Ciclev10018090m 134 KRAKRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK 192 9*****************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-5	130	194	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	132	195	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.5E-6	132	184	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.9E-8	134	188	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.7E-8	134	188	No hit	No description
CDD	cd14703	5.12E-12	135	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MILPPTPLAP PGFSVLNFEG SGKETTAASA VDDMDQVAKE DFFSKFLSVS VAGVPVPSME 60 QYSMSSASNT GVLPMAQADD YHDEMADPIL PISHKLAGNK PPPATADDDK DKPLVFKKTM 120 PPHELAQLAI FDPKRAKRIV ANRMSAIRAK ERKKLYIYML EHKMHNLRSN STTLTAQLTL 180 LETESNSLDA EKAVLKHRLE ITLQKIHLQD WLNDQIRSEI QHMKTVLGQN IPNLGAHIGL 240 SRSNSYRDIN ASIGAAAQLL PELQLQNPYL EQQPQYVFQQ QPYLGLNNFG FQNEQGECSQ 300 LQQQLLYQEN PPPLDHYQMQ NEQAQGHQLQ QQQQLPKF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447900.2	0.0	probable transcription factor PosF21
TrEMBL	V4UAJ4	0.0	V4UAJ4_9ROSI; Uncharacterized protein
STRING	XP_006447900.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23078	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	2e-26	bZIP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018090m
Entrez Gene	18052517