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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10018041m |
| Common Name | CICLE_v10018041mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
E2F/DP |
| Protein Properties |
Length: 377aa MW: 42394.7 Da PI: 9.2383 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10018041m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 71.5 | 9.4e-23 | 25 | 90 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
rkeksL+ll++kflkl+++ + + l+++a++L v +rRRiYD++N+Le+++++++++kn ++w+g
Ciclev10018041m 25 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRL---GV--ERRRIYDVVNILESIGVVARQAKNLYSWQG 90
79*****************999************...**..****************************98 PP
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| 2 | E2F_TDP | 74.4 | 1.2e-23 | 149 | 228 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71
+eksL+lltq+f+kl+ +s+ +++tl+++a +L+ + +++k RR+YDi+NV++++nliek ++k+++rw g
Ciclev10018041m 149 REKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDsnnstAMRTKIRRLYDIANVFSSMNLIEKthhpeSRKPAFRWLG 228
79***************************************9***********************9999999******87 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MSSSSSSSAF GFREAEPDGK QFYSRKEKSL GLLCSKFLKL YNRDGVESIG LDDAASRLGV 60
ERRRIYDVVN ILESIGVVAR QAKNLYSWQG FDAIPEALEV LKEEGLRENF NINGCTNSGN 120
VLNDNENEGS TCTVTDGQDS SSSKIESKRE KSLWLLTQNF VKLFLCSDVD MITLDSAAMA 180
LLGDSNNSTA MRTKIRRLYD IANVFSSMNL IEKTHHPESR KPAFRWLGWK GKPCNRSAGF 240
LDLNEPRKRV FGTDITNLRL KKNKVDSLTE KKSNPKLNVP KYFKHCNEES NPDESRLEQH 300
SKHKSKGFVY GPFTPASISG IHDSRSKNTK QVLDFASLAS TFRPKYHNEA VNGLFGHYVE 360
AWKSWYAEVG DKEQKT*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in mid-S phase. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:15308755}. |
| Uniprot | TISSUE SPECIFICITY: High expression in young cotyledons and leaves, hypocotyls, shoot apical meristem, roots and mature pollen grains, moderate in developing trichomes, flowers and at early stages of developing anthers, and barely detectable in mature leaves. Not detected in primary root meristem, emerging lateral roots, pistils, developing embryos and siliques. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15308755}. |
