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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10017809m |
| Common Name | CICLE_v10017809mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
LBD |
| Protein Properties |
Length: 270aa MW: 30127.6 Da PI: 7.0007 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10017809m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 114.7 | 6.1e-36 | 12 | 109 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93
aCaaCk++rrkC++dCv+ pyfp +q+++f+ vhk+FG+sn++k++k+l++ + r++a++s+ +eA ++ +dPv+G +g ++kl+++ e l +
Ciclev10017809m 12 ACAACKHQRRKCTQDCVFPPYFPGNQSEEFQLVHKIFGVSNLSKIIKNLETPQdRQEAVESIKWEAAMWEQDPVHGPLGAYRKLEREFEALMKM 105
7************************************************66555*********************************9998765 PP
DUF260 94 lall 97
+++
Ciclev10017809m 106 KNQQ 109
5554 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MANNGELGNR YACAACKHQR RKCTQDCVFP PYFPGNQSEE FQLVHKIFGV SNLSKIIKNL 60
ETPQDRQEAV ESIKWEAAMW EQDPVHGPLG AYRKLEREFE ALMKMKNQQQ TSQQIIDYGR 120
GPVMTTSGLI SYPTSQQEQA HVINSNEAPH AFIDQKFNTF GQPSDADHNR SGPTMVGHSY 180
NSPINDNNLV QIMEQQGPRA RQRRGIATSG DMAINDGQLP RVGGECYDGV TSYYAPTLPS 240
SSHSQLSGPY AQLPYLHINI NGFAPRREI*
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