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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10017716m |
Common Name | CICLE_v10017716mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C2H2 |
Protein Properties |
Length: 339aa MW: 37887 Da PI: 7.3272 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10017716m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 174 | 193 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Ciclev10017716m 174 FSCPLCFKTFNRYNNMQMHM 193
89*****************9 PP
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2 | zf-C2H2 | 12.5 | 0.00044 | 258 | 280 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +C+k F + + ++H +++
Ciclev10017716m 258 FMCRKCSKAFAVRGDWRTHEKNC 280
89*****************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MADPYSNYFN GWLNFAALQH SSSSNNSSSN YYTPFAFNIY SSNNNNNNFC THYHQYSSPP 60 SPPLKEALPL LSLSPARHDG IVKADESSCS VMDTEESSAA YCDDHHESAS LTVSLHLGLA 120 ESSSADLISD YNNDNNNKEE VVTIASGRGG GCSLNKGQYW IPTPAQILIG PTQFSCPLCF 180 KTFNRYNNMQ MHMWGHGSQY RKGPESLRGS QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK 240 DFRTLQTHYK RKHGIKPFMC RKCSKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD 300 HIKAFGNGHA SCGIDTFEDD EPASEIEQDN NESSRDID*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |