PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017618m
Common NameCICLE_v10017618mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 338aa    MW: 39302.7 Da    PI: 6.7164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017618mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.71.2e-45511782128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      p+G+rF P d+el+v+yLkkk+ +++l+  + i++v++y+++P+dL +    ++++eke yfF++rd+ky++g+r+nra+ +gyWkatg dk++
  Ciclev10017618m  51 PAGYRFCPFDSELIVYYLKKKIMNERLPP-NRINDVNLYQFNPHDLAEmykGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSI 143
                      89************************999.77**************85233334478899********************************** PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ +g++vg kktLvfy+g+ pkg kt W+mheyr+
  Ciclev10017618m 144 KH-NGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRV 178
                      **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5546207IPR003441NAC domain
PROSITE profilePS5100552.74350207IPR003441NAC domain
PfamPF023652.8E-2351178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEETKTKMEV KSSVEINNSP ERKLQPLTAA TKSTPVSQRR HDNDSYWDSF PAGYRFCPFD  60
SELIVYYLKK KIMNERLPPN RINDVNLYQF NPHDLAEMYK GCAEKEKEFY FFTPRDRKYK  120
NGTRPNRAAG EGYWKATGAD KSIKHNGAVV GFKKTLVFYE GKPPKGDKTF WIMHEYRVNN  180
DSPPSTRTRL STDMRLDDWV LCRIYYKERS DKSLKSLHRT EDRASTEETN EPDCDKGSAV  240
DFSGYADTYS GYMQHLWQQQ NAFSQIPSFK DVSFDSIVNL DEPFQHDGTS IFGPDCVTND  300
LFWSAYNQEY ICFDQSQLDF SNRFEDTIIV KSNNSHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51362081169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446143.10.0NAC transcription factor 29
RefseqXP_015383322.10.0NAC transcription factor 29-like
SwissprotK4BNG72e-54NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A2H5P4170.0A0A2H5P417_CITUN; Uncharacterized protein
TrEMBLV4TG880.0V4TG88_9ROSI; Uncharacterized protein
STRINGXP_006446143.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1887468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-55NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]