PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017494m
Common NameCICLE_v10017494mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 283aa    MW: 30943.2 Da    PI: 5.2413
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017494mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-192977355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Ciclev10017494m 29 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 77
                     67******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-342891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-292885IPR001471AP2/ERF domain
PROSITE profilePS5103220.7842885IPR001471AP2/ERF domain
CDDcd000185.93E-312884No hitNo description
PRINTSPR003673.6E-82940IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-212986IPR016177DNA-binding domain
PfamPF008474.8E-123177IPR001471AP2/ERF domain
PRINTSPR003673.6E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNSSSSTKIK KKQTQQGQDT TGGSSGNRFL GVRRRPWGRY AAEIRDPSTK ERHWLGTFDT  60
AEEAALAYDR AARSMRGPRA RTNFVYSDMP PGSSVTSIIS PDEPQQQHQY SFHIPSPNSH  120
PRSEPNLQHQ PFLNQDFSSG FSSTFPNVND DHYSHNNNAL SYSYTYDDNN SNSTELPPLP  180
SDLSAYAGYS TDSNVMSHSS YDELGQGAWS TSESSANLMG FCEPSSVTSN NGFDTMGSGS  240
GGSYFGFDSS DYVQHSPLFS SMPPVSDTVP DGFHLGSSSY FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-202484162ATERF1
3gcc_A4e-202484162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951335.10.0ethylene-responsive transcription factor LEP
TrEMBLV4U2Q60.0V4U2Q6_9ROSI; Uncharacterized protein
STRINGXP_006446887.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-41ERF family protein