PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 143aa MW: 15674.6 Da PI: 9.7627

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017490m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.2	2.6e-19	88	124	1	35
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC+t++Tp+WRrgp g+ktLCnaCG++yrk+++ Ciclev10017490m 88 CTnyNCKTSDTPMWRRGPLGPKTLCNACGIKYRKEEE 124 55559*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.1E-14	84	135	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.65E-13	85	130	No hit	No description
Pfam	PF00320	4.3E-17	88	124	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.2E-15	91	126	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.018	92	138	IPR000679	Zinc finger, GATA-type
CDD	cd00202	4.55E-11	92	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MGSPPLPIYY PHNINSVNNF NINPNQNVPL AAAAPPPPPM NDYTLLDVPP RRDELEEGSS 60 SAAAPARRRA TGTRRPRGGS IIDPNKRCTN YNCKTSDTPM WRRGPLGPKT LCNACGIKYR 120 KEEEKRLKAK EANSQSSNTE TD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445921.2	3e-56	GATA zinc finger domain-containing protein 12
Swissprot	Q9LT45	5e-19	GAT29_ARATH; GATA transcription factor 29
TrEMBL	A0A2H5PC72	3e-97	A0A2H5PC72_CITUN; Uncharacterized protein
TrEMBL	V4UAD8	7e-99	V4UAD8_9ROSI; Uncharacterized protein
STRING	XP_006445921.1	1e-99	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10652	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	2e-15	GATA transcription factor 29

Link Out ? help Back to Top
Phytozome	Ciclev10017490m
Entrez Gene	18053014

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]