PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017149m
Common NameCICLE_v10017149mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LSD
Protein Properties Length: 134aa    MW: 14615.6 Da    PI: 7.2178
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017149mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.51.3e-144468125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     Cg+Cr lL+YPrGA++V+C++C+tV
  Ciclev10017149m 44 CGSCRQLLAYPRGARHVKCSCCQTV 68
                     ************************9 PP
2zf-LSD141.42.4e-1382106125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C +C +lL+YP+GA+sVRC++C +V
  Ciclev10017149m  82 CASCAVLLMYPYGASSVRCSSCRFV 106
                      **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.9E-184171IPR005735Zinc finger, LSD1-type
PfamPF069434.1E-124468IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.9E-1179107IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-1182106IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MENREKESME NQEENEEAGP PPGWQPIPPP LPVPSPSEMA QMVCGSCRQL LAYPRGARHV  60
KCSCCQTVNF VLEAHQVGQV KCASCAVLLM YPYGASSVRC SSCRFVTEIG DHNRRAPWSV  120
QQGQSAPPSN TVR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449334.14e-94protein LOL2
SwissprotO654261e-43LOL2_ARATH; Protein LOL2
TrEMBLA0A2H5N2N05e-93A0A2H5N2N0_CITUN; Uncharacterized protein
STRINGXP_006449334.11e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-42lsd one like 2