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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10016993m |
Common Name | CICLE_v10016993mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
LBD |
Protein Properties |
Length: 168aa MW: 18167.7 Da PI: 8.3747 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10016993m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 145.8 | 1.2e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lq+q++ l+++l
Ciclev10016993m 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQL 106
7********************************************************************************************* PP
DUF260 95 allkee 100
al+++e
Ciclev10016993m 107 ALAQAE 112
*99976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MKESGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE 60 LPVHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQNQID VLQTQLALAQ AEVVHLRVRQ 120 TASLSSHGFG PASPSNSGSP SSKLVASQTK PIYDMDLAHY EESMWTC*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM444303 | 1e-53 | AM444303.2 Vitis vinifera contig VV78X107337.4, whole genome shotgun sequence. |