PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016938m

Common Name

CICLE_v10016938mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 174aa MW: 19523.1 Da PI: 6.8035

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016938m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.9e-14	14	62	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ n+ E+ RR ++++ +++L +l+P++ Kls eiL +A+ YI +Lq Ciclev10016938m 14 RAQRNIKEKHRRTHMKDLISQLASLIPSS-----SKLSMPEILDEATSYITHLQ 62 8889**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.456	12	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-15	12	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-14	12	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-10	14	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.59E-8	17	66	No hit	No description
SMART	SM00353	1.7E-10	18	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MAEENSSAAG SSSRAQRNIK EKHRRTHMKD LISQLASLIP SSSKLSMPEI LDEATSYITH 60 LQKNKESLER RRALLKEEDH YEPTVMNITT SGSTLEVNLI CGSNRNFMFH EIISVLEEGA 120 AEVINVTQFN SGDRVIFSVL SKVHFRPTQA EAVNSRIGVE TERVQERLKE LIL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446346.1	1e-124	transcription factor bHLH167 isoform X1
TrEMBL	A0A2H5PEW4	1e-122	A0A2H5PEW4_CITUN; Uncharacterized protein
TrEMBL	V4UBF8	1e-122	V4UBF8_9ROSI; Uncharacterized protein
STRING	XP_006446346.1	1e-123	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	3e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016938m
Entrez Gene	18051113