PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016895m
Common NameCICLE_v10016895mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 180aa    MW: 20537.4 Da    PI: 6.7699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016895mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191669356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +R ++t++q++ Le++F+ n++++ +++ eLA +lgL+ rq+ vW+qNrRa+ek
  Ciclev10016895m 16 SRKRLTQDQVRLLETCFNANQKLQVDRKLELACRLGLPPRQIAVWYQNRRAREK 69
                     6999************************************************99 PP
2HD-ZIP_I/II101.47.6e-3317107393
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ++rl+++qv+lLE++F++++kL+ +rK ela +Lgl prq+avW+qnrRAR k + +E dy+++++++d++ +en++Le+ev  L++elk+
  Ciclev10016895m  17 RKRLTQDQVRLLETCFNANQKLQVDRKLELACRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 107
                      79*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8231171IPR001356Homeobox domain
SuperFamilySSF466892.72E-181279IPR009057Homeodomain-like
SMARTSM003893.2E-171375IPR001356Homeobox domain
PfamPF000461.8E-161669IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-181669IPR009057Homeodomain-like
CDDcd000861.28E-141771No hitNo description
PRINTSPR000312.3E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000312.3E-55167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDLQFSSENR QPSKLSRKRL TQDQVRLLET CFNANQKLQV DRKLELACRL GLPPRQIAVW  60
YQNRRAREKI HTIELDYKTI QQELDNVLAE NRKLEQEVGM LKHELKKSQQ MLLASNPSAT  120
LLPSVSTSGD NDLTSSSSPL NMTCNWEDTG LLPMDELYSC LIRPQGQPEN HSMNDLSIV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446710.11e-130homeobox-leucine zipper protein ATHB-52
TrEMBLV4U7751e-129V4U775_9ROSI; Uncharacterized protein
STRINGXP_006446710.11e-129(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2299333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-31homeobox protein 52