PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016877m
Common NameCICLE_v10016434mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 183aa    MW: 20389.4 Da    PI: 10.2999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016877mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.11.8e-1927954128
              NAM  54 eekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +ek+ yfFs+ ++++a  ++ + + a+ sgyWk  gk++++l++ ++++vg++ktL+f +g++ + +kt+Wvmh+y+l
  Ciclev10016877m   2 KEKKRYFFSNIRNESAiaNDGKCKIAAGSGYWKPVGKNRQILASgTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHL 79 
                      46788***99877776435556666999**************9967778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7181109IPR003441NAC domain
SuperFamilySSF1019419.68E-222109IPR003441NAC domain
PfamPF023652.5E-9779IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKEKKRYFFS NIRNESAIAN DGKCKIAAGS GYWKPVGKNR QILASGTKQV VGIRKTLIFC  60
EGKRGHETKT QWVMHQYHLV AIATNTNLTQ PVFKMVIIGD WVVYRIFQRK KKPKKRGVVS  120
SNNLNITKNS HKNQLQVIDF SVIEADQTDL LGPPPQPASS CSSEITADEL SPSVLDQEET  180
SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-14311570171NO APICAL MERISTEM PROTEIN
1ut4_B4e-14311570171NO APICAL MERISTEM PROTEIN
1ut7_A4e-14311570171NO APICAL MERISTEM PROTEIN
1ut7_B4e-14311570171NO APICAL MERISTEM PROTEIN
3swm_A4e-14311573174NAC domain-containing protein 19
3swm_B4e-14311573174NAC domain-containing protein 19
3swm_C4e-14311573174NAC domain-containing protein 19
3swm_D4e-14311573174NAC domain-containing protein 19
3swp_A4e-14311573174NAC domain-containing protein 19
3swp_B4e-14311573174NAC domain-containing protein 19
3swp_C4e-14311573174NAC domain-containing protein 19
3swp_D4e-14311573174NAC domain-containing protein 19
4dul_A4e-14311570171NAC domain-containing protein 19
4dul_B4e-14311570171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114QRKKKPKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447003.11e-133NAC domain-containing protein 83
RefseqXP_006468841.11e-133NAC domain-containing protein 83-like
TrEMBLV4W2U71e-134V4W2U7_9ROSI; Uncharacterized protein
STRINGXP_006468841.11e-133(Citrus sinensis)
STRINGXP_006447003.11e-133(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-22NAC domain containing protein 83