PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016850m | ||||||||
Common Name | CICLE_v10016846mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 21037.6 Da PI: 6.523 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 9 | 60 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ + +Er+RR++++ +++L +l+P+ + p + s + L +A++YIk Lq Ciclev10016850m 9 RTDRKTIERNRRNQMKALYSTLNSLVPHqR---PMEATSLPDQLDEATKYIKRLQ 60 778899**********************66...9999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-12 | 5 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-6 | 5 | 64 | No hit | No description |
PROSITE profile | PS50888 | 11.579 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 9 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 9 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MENNPSSSRT DRKTIERNRR NQMKALYSTL NSLVPHQRPM EATSLPDQLD EATKYIKRLQ 60 TNLERMKERK ERLMGIEKPD AAAATSSSGN SSGTITTGLR SPQIEIHEMG SALEVVLTTG 120 LDFQFMFIET IRLLHEEGVE IVNASFNVVE DTIFHTIHSK IGDSGSDHDA SARISERLKK 180 FGQDGSAF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.20835 | 0.0 | abscission zone| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449353.1 | 1e-137 | transcription factor bHLH162 | ||||
Refseq | XP_006449355.1 | 1e-137 | transcription factor bHLH162 | ||||
TrEMBL | A0A2H5N2R8 | 1e-136 | A0A2H5N2R8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4W8P1 | 1e-136 | V4W8P1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449353.1 | 1e-137 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016850m |
Entrez Gene | 18053535 |