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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016466m | ||||||||
Common Name | CICLE_v10016466mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27358.5 Da PI: 7.0341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.1e-13 | 49 | 96 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +E++RRd++++ +++L++llP++ psk ls + + +A++YIk+L+ Ciclev10016466m 49 KTIEKNRRDQMKNLYSTLKSLLPNQ---PSKEeLSLPDQVDEAINYIKMLE 96 689*********************7...55555***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.3E-13 | 42 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.192 | 43 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-11 | 47 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-9 | 49 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-5 | 49 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.89E-8 | 51 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MFKKLSIAYP IFTKKLDLKM GYLGQSLEAK GSMKRKQCSS SSPTKIERKT IEKNRRDQMK 60 NLYSTLKSLL PNQPSKEELS LPDQVDEAIN YIKMLETKLK ECKKKKESLQ GRERSHACIS 120 DGTEARLMTS SSPKAPEIEI HEMGSNLEVI LTSGVDDQFI FYDVIRILHQ DGAEILNANF 180 SVVGNTIFHV IHAEIRDSMF GFGAAKISER LKGFVSGCAS EGEMQLPELW DFEINPELWE 240 F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 57 | EKNRRDQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447292.1 | 1e-180 | transcription factor bHLH162 | ||||
Refseq | XP_006469875.2 | 1e-180 | transcription factor bHLH162-like | ||||
TrEMBL | V4U3N5 | 1e-178 | V4U3N5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006447292.1 | 1e-179 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016466m |
Entrez Gene | 18053485 |