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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10016422m |
| Common Name | CICLE_v10016422mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
LBD |
| Protein Properties |
Length: 247aa MW: 26903.4 Da PI: 8.8108 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10016422m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 93.3 | 2.7e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C++lr++C++dC++ p++ ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++ +q
Ciclev10016422m 4 SCNGCRILRKGCSDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQ 97
6*********************9998667889************************************************************** PP
DUF260 90 lkaelallke 99
++++++l ++
Ciclev10016422m 98 AAVDAVLKGK 107
**99988765 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MRMSCNGCRI LRKGCSDDCI IKPCLDWIKS SDAQANATLF LAKFYGRAGL INLIEAGPQH 60
LRPAIFKSLL YEACGRIVDP ISGSVGLLWS GKWEQCQAAV DAVLKGKTIT QNPSSSSSSS 120
SSNNNAPAAA PWTLNVQSPP PKIYDIRHVS KDPSAANCSD KTKARAKRSW NRRPKAPVVG 180
RESIQDQSSW LQSQVISRSE DDYESIFSVE TVEGSLDVNR NKQRWVQNGS GDVGLELTLC 240
LPPTNH*
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