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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016276m | ||||||||
Common Name | CICLE_v10016276mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 28817.6 Da PI: 10.2967 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.4e-21 | 61 | 110 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g Ciclev10016276m 61 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 110 6********.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.99E-19 | 61 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 61 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.355 | 61 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-40 | 61 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 61 | 119 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-14 | 61 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MPARMKEYLK PAACLDNPAC HHTLSKGKTE RKKKTMAPKE RTISGNRKNI DNRSNNKKEV 60 HYRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEEAARA YDAAAREFRG SKAKTNFPLP 120 SEIVAINKNS NNQQSPSQSS TVESSSSPPP MEPNVEREVT RHVGCFGSGN GLVGRFPFVY 180 QQPGVVALGG GCVTGAAPPV LFLNGFGGSN LMGSVYPVRF DSAGIGFNGA VRNETETESS 240 SVAAVDCKPR RVLNLDLNLA PPVVDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 61 | 119 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-22 | 61 | 119 | 5 | 64 | ATERF1 |
3gcc_A | 2e-22 | 61 | 119 | 5 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024047707.1 | 1e-169 | ethylene-responsive transcription factor 9 | ||||
Refseq | XP_024951173.1 | 1e-169 | ethylene-responsive transcription factor 9 | ||||
TrEMBL | V4U3I7 | 0.0 | V4U3I7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006447242.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-38 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016276m |
Entrez Gene | 18052831 |