PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016261m
Common NameCICLE_v10016261mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 270aa    MW: 29986 Da    PI: 6.063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016261mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1276122354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+riN  +++Lr+l+P a     +K++Ka+ L++++  +k+L
  Ciclev10016261m  76 KNHIEAERNRRKRINGHLDTLRSLIPGA-----TKMDKATLLTEVISQLKEL 122
                      589************************9.....9***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-1368124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.72673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1076122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-1176122No hitNo description
Gene3DG3DSA:4.10.280.103.2E-1277147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.3E-6161205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLAMDPYFWS SCRNDNGVEI LTDEFVVNNG FQGKSRNGSS SHSSLVLDSE RGELVEANVK  60
LQRKGVSEDR SVAALKNHIE AERNRRKRIN GHLDTLRSLI PGATKMDKAT LLTEVISQLK  120
ELDKNATEAT EGFLIPTDID EVKVEQQEDG LDGAPYSIKA SLCCNYKPGL LSDLRRVLEA  180
LHLSIVKAEI ATLEGRMKNI FVMASCKELN FENTEVCQSL VSSVHQAIRS VLDKFSATEE  240
FLLGARLSNK RRRVSLFDSS LSSSSDYLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024047431.10.0putative transcription factor bHLH107 isoform X1
TrEMBLV4U2850.0V4U285_9ROSI; Uncharacterized protein
STRINGXP_006446772.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1859456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-31bHLH family protein